Browse Element(s) Details


OsAffx.28088.1.S1_at

Description tigr:9634.m04227
TID=OsAffx.28088.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4374011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43680Os.57572.1.S1_at11/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43680Os.53850.1.S1_at1/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43690OsAffx.15912.1.S1_at11/116+26302932..26310858Utp21 specific WD40 associated domain containing protein, expressed
LOC_Os06g43700Os.26866.1.S1_at11/116+26311769..26314024amino acid transporter family protein, putative, expressed
LOC_Os06g43710Os.27248.1.S1_a_at11/116+26315311..26317957Protein OS-9 precursor, putative, expressed
LOC_Os06g43720NANA6+26318548..26319186hypothetical protein
LOC_Os06g43730OsAffx.28087.1.S1_at11/116+26320260..26320562hypothetical protein
LOC_Os06g43740OsAffx.28088.1.S1_at11/116+26321831..26323096F-box domain containing protein
LOC_Os06g43750OsAffx.15913.1.S1_at11/116+26325170..26328347hypothetical protein
LOC_Os06g43760Os.8879.1.S1_at6/116+26331273..26343999isoleucyl-tRNA synthetase, putative, expressed
LOC_Os06g43770Os.56085.1.S1_at11/116+26345139..26346101expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28088.1.S1_at--422--511Chr06:26322376..26322400 (25 bp)
ATCGTCAAGTGCACGCTTCCGGCCG
LOC_Os06g43740
OsAffx.28088.1.S1_at--517--1591Chr06:26322228..26322252 (25 bp)
AGCTCCGCGTCTCGTGTCGCTGCGA
LOC_Os06g43740
OsAffx.28088.1.S1_at--602--8711Chr06:26322214..26322238 (25 bp)
TGTCGCTGCGACACCGAGCCCATGG
LOC_Os06g43740
OsAffx.28088.1.S1_at--1155--1351Chr06:26321979..26322003 (25 bp)
AGAGCAAGTCTCTGTCGGTAGAAGA
LOC_Os06g43740
OsAffx.28088.1.S1_at--1015--9411Chr06:26321965..26321989 (25 bp)
TCGGTAGAAGACTGCGACAAGCTGA
LOC_Os06g43740
OsAffx.28088.1.S1_at--671--671Chr06:26321941..26321965 (25 bp)
ATGAAAGGCATCCTACGTGGGCTCC
LOC_Os06g43740
OsAffx.28088.1.S1_at--763--9931Chr06:26321928..26321952 (25 bp)
TACGTGGGCTCCTGCCTGGACTGCG
LOC_Os06g43740
OsAffx.28088.1.S1_at--718--8411Chr06:26321904..26321928 (25 bp)
GGCCGCGCAGCTGGGATTGGGTTCA
LOC_Os06g43740
OsAffx.28088.1.S1_at--307--31Chr06:26321889..26321913 (25 bp)
ATTGGGTTCAGAGGAAATGCGTCAA
LOC_Os06g43740
OsAffx.28088.1.S1_at--725--951Chr06:26321878..26321902 (25 bp)
AGGAAATGCGTCAAGCGCGATGAAA
LOC_Os06g43740
OsAffx.28088.1.S1_at--605--4571Chr06:26321864..26321888 (25 bp)
GCGCGATGAAAGGTGGCTTAGCTTT
LOC_Os06g43740
Target Sequence 
ATCGTCAAGTGCACGCTTCCGGCCGGCGGCGGCATCGACATCACGTCCGCCGCCATGCCGCGGCTGAGGCGCCTCATCGT
CACCGACGTCGCCGTGATGAGCGCCGCCACCAAGGCCGGGATCGCCGTGCTCGCCGACGAGCTGGCGGAGCTCCGCGTCT
CGTGTCGCTGCGACACCGAGCCCATGGCGACGTCCGACCCCGCCGCCTACCACCTGAAGCCGCGGTTCCGCGCCCTCTTC
ACCCGCTACTCGTGCGTCCGCGTGCGCGCGCCCAGGCTGCGCGTGTTCGAGTGGCGCTGCTGCTTCGCCGACGAGGTGCG
CGTGGAGAGCGTCGGCCGCCTCTCGGACGTCGCGGTGGAGCTCGCCGCCGGCCGGCTGCCGAGGCTGTGGGACGAGGAGA
GCAAGTCTCTGTCGGTAGAAGACTGCGACAAGCTGATGAAAGGCATCCTACGTGGGCTCCTGCCTGGACTGCGGCCGCGC
AGCTGGGATTGGGTTCAGAGGAAATGCGTCAAGCGCGATGAAAGGTGGCTTAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis