Browse Element(s) Details


Os.57572.1.S1_at

Description gb:AK101292.1
DB_XREF= gi:32986501
TID=Os.57572.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.57572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033G18, full insert sequence.
FL= gb:AK101292.1 gb:AK101919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4368011/11ankryin repeat S-palmitoyl transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43660Os.166.2.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43660Os.166.1.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43670OsAffx.28086.1.S1_at11/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43670Os.16349.1.S1_at1/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43680Os.57572.1.S1_at11/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43680Os.53850.1.S1_at1/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43690OsAffx.15912.1.S1_at11/116+26302932..26310858Utp21 specific WD40 associated domain containing protein, expressed
LOC_Os06g43700Os.26866.1.S1_at11/116+26311769..26314024amino acid transporter family protein, putative, expressed
LOC_Os06g43710Os.27248.1.S1_a_at11/116+26315311..26317957Protein OS-9 precursor, putative, expressed
LOC_Os06g43720NANA6+26318548..26319186hypothetical protein
LOC_Os06g43730OsAffx.28087.1.S1_at11/116+26320260..26320562hypothetical protein
LOC_Os06g43740OsAffx.28088.1.S1_at11/116+26321831..26323096F-box domain containing protein
LOC_Os06g43750OsAffx.15913.1.S1_at11/116+26325170..26328347hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0009932biological_processcell tip growth
GO:0016020cellular_componentmembrane
GO:0000035molecular_functionacyl binding
GO:0005515molecular_functionprotein binding
GO:0016417molecular_functionS-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57572.1.S1_at--1033--10011Chr06:26301531..26301555 (25 bp)
TAGAACACCATTGGGCCTAGGGCTG
LOC_Os06g43680
Os.57572.1.S1_at--816--5531Chr06:26301566..26301590 (25 bp)
GAAACAGTGCTTCCCGGCAGTATGT
LOC_Os06g43680
Os.57572.1.S1_at--208--7171Chr06:26301594..26301618 (25 bp)
GTCTCTTCTCCCATTGTGATTTGTT
LOC_Os06g43680
Os.57572.1.S1_at--838--10131Chr06:26301620..26301644 (25 bp)
TATGCAGATCATGTGTGTGCTCTCT
LOC_Os06g43680
Os.57572.1.S1_at--186--6931Chr06:26301652..26301676 (25 bp)
GTATGTGTTCATGCTGAGGCTCCAT
LOC_Os06g43680
Os.57572.1.S1_at--771--3571Chr06:26301705..26301729 (25 bp)
CATAGGTTTCGCTAGCTTACGTTAA
LOC_Os06g43680
Os.57572.1.S1_at--647--7771Chr06:26301817..26301841 (25 bp)
GGTGCTCATGAATATCCGCTGATCC
LOC_Os06g43680
Os.57572.1.S1_at--969--1411Chr06:26301849..26301873 (25 bp)
AGAAATGTCTTGTCGCTCCTGAAAA
LOC_Os06g43680
Os.57572.1.S1_at--689--5531Chr06:26301907..26301931 (25 bp)
GAAACATCTTCATTGCTGTGTCCCT
LOC_Os06g43680
Os.57572.1.S1_at--426--4731Chr06:26301921..26301945 (25 bp)
GCTGTGTCCCTTGGTGTCAATATAA
LOC_Os06g43680
Os.57572.1.S1_at--629--4911Chr06:26301959..26301983 (25 bp)
GCTTCTGGATCTTACATCTGTGGGA
LOC_Os06g43680
Target Sequence 
TAGAACACCATTGGGCCTAGGGCTGGGCCTTGGACGAAACAGTGCTTCCCGGCAGTATGTCCGGTCTCTTCTCCCATTGT
GATTTGTTATATGCAGATCATGTGTGTGCTCTCTGTAGATTGTATGTGTTCATGCTGAGGCTCCATTATTTATTTAGCTG
CTTGTGACATACCACATAGGTTTCGCTAGCTTACGTTAATATTGTTGGGGTGCTAGCTGTGTGAAAATTCAGATCTATTA
GATCCAGTATTTTTTGTGGTGAATACATAGGAGATGAAGGTAGCAAGGTGCTCATGAATATCCGCTGATCCGCAGTTCAG
AAATGTCTTGTCGCTCCTGAAAAGAGGGCAACAATTTTGTGCAGATGCAGCAGCATGAAACATCTTCATTGCTGTGTCCC
TTGGTGTCAATATAACTCCAGCATTTTAGCTTCTGGATCTTACATCTGTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis