Browse Element(s) Details


Os.27248.1.S1_a_at

Description gb:AK105643.1
DB_XREF= gi:32990852
TID=Os.27248.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-311-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F03, full insert sequence.
FL= gb:AK105643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4371011/11Protein OS-9 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43670OsAffx.28086.1.S1_at11/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43670Os.16349.1.S1_at1/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43680Os.57572.1.S1_at11/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43680Os.53850.1.S1_at1/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43690OsAffx.15912.1.S1_at11/116+26302932..26310858Utp21 specific WD40 associated domain containing protein, expressed
LOC_Os06g43700Os.26866.1.S1_at11/116+26311769..26314024amino acid transporter family protein, putative, expressed
LOC_Os06g43710Os.27248.1.S1_a_at11/116+26315311..26317957Protein OS-9 precursor, putative, expressed
LOC_Os06g43720NANA6+26318548..26319186hypothetical protein
LOC_Os06g43730OsAffx.28087.1.S1_at11/116+26320260..26320562hypothetical protein
LOC_Os06g43740OsAffx.28088.1.S1_at11/116+26321831..26323096F-box domain containing protein
LOC_Os06g43750OsAffx.15913.1.S1_at11/116+26325170..26328347hypothetical protein
LOC_Os06g43760Os.8879.1.S1_at6/116+26331273..26343999isoleucyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27248.1.S1_a_at--188--431Chr06:26315618..26315642 (25 bp)
ATCATCATCCCAGATCCAGATGGAT
LOC_Os06g43710
Os.27248.1.S1_a_at--204--6371Chr06:26315606..26315630 (25 bp)
GATCCAGATGGATTGCATAATTATG
LOC_Os06g43710
Os.27248.1.S1_a_at--596--4971Chr06:26315560..26315584 (25 bp)
GCATCATTGTTATAGCATCAGACAG
LOC_Os06g43710
Os.27248.1.S1_a_at--1072--10651Chr06:26315521..26315545 (25 bp)
TTCCGGGTGCAACGGCAATTTGGCA
LOC_Os06g43710
Os.27248.1.S1_a_at--252--1931Chr06:26315510..26315534 (25 bp)
ACGGCAATTTGGCAATGCTAACAAT
LOC_Os06g43710
Os.27248.1.S1_a_at--636--2971Chr06:26315488..26315512 (25 bp)
AATGGTATAGGTTGTTCGCGGAGCA
LOC_Os06g43710
Os.27248.1.S1_a_at--536--6711Chr06:26315475..26315499 (25 bp)
GTTCGCGGAGCATATTATCCATTCA
LOC_Os06g43710
Os.27248.1.S1_a_at--312--10151Chr06:26315460..26315484 (25 bp)
TATCCATTCATGTGAAGCAGGTTTG
LOC_Os06g43710
Os.27248.1.S1_a_at--516--7871Chr06:26315441..26315465 (25 bp)
GGTTTGAGATCATCAGACTAACATT
LOC_Os06g43710
Os.27248.1.S1_a_at--311--5712Chr06:26315426..26315450 (25 bp)
GACTAACATTGATCATGAGGAACAT
LOC_Os06g43710
Os.27248.1.S1_a_at--861--5331Chr06:26315367..26315391 (25 bp)
GAAGTACTAAATTTCAGTGTCAAAC
LOC_Os06g43710
Target Sequence 
ATCATCATCCCAGATCCAGATGGATTGCATAATTATGCAGCTTATGNTACTTGATTATGCATCATTGTTATAGCATCAGA
CAGNGAAGAAAATCATNTTCCGGGTGCAACGGCAATTTGGCAATGCTAACAATGGTATAGGTTGTTCGCGGAGCATATTA
TCCATTCATGTGAAGCAGGTTTGAGATCATCAGACTAACATTGATCATGAGGAACATTACGGGCGATGAGTGNTTNTGTA
NTAGTGCAAACGAAGTACTAAATTTCAGTGTCAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27248.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis