Browse Element(s) Details


OsAffx.28085.1.S1_x_at

Description tigr:9634.m04215
TID=OsAffx.28085.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At5g20270F5O24_160
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4362011/11Haemolysin-III related family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43580NANA6+26207298..26211004hypothetical protein
LOC_Os06g43590Os.6788.1.S1_at11/116+26214503..26217659SNF7 family protein, expressed
LOC_Os06g43600Os.7771.1.S1_at10/116+26226111..26227738Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g43610Os.24754.1.S1_at11/116+26228860..26231827formamidopyrimidine-DNA glycosylase family protein, expressed
LOC_Os06g43620Os.9686.1.S1_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620OsAffx.28085.1.S1_x_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620Os.9686.1.S1_s_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43630OsAffx.15911.1.S1_x_at11/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43630Os.27130.1.S1_at10/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43640Os.11442.1.S1_at11/116+26253172..26258258expressed protein
LOC_Os06g43650Os.12151.1.S1_at11/116+26262130..26265825expressed protein
LOC_Os06g43650OsAffx.16811.1.S1_at1/116+26262130..26265825expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28085.1.S1_x_at--512--8271Chr06:26234435..26234459 (25 bp)
GGCATGTTCGACCTGTGCGGCCACA
LOC_Os06g43620
OsAffx.28085.1.S1_x_at--150--9571Chr06:26234347..26234371 (25 bp)
TCTTCATCCAGGCACGCGACGAGAT
LOC_Os06g43620
OsAffx.28085.1.S1_x_at--169--3811Chr06:26234319..26234343 (25 bp)
CTGCCCGGCGCCATAGCTAAGCTAG
LOC_Os06g43620
OsAffx.28085.1.S1_x_at--986--4831Chr06:26234304..26234328 (25 bp)
GCTAAGCTAGCGATCGAACACACAA
LOC_Os06g43620
OsAffx.28085.1.S1_x_at--544--5531Chr06:26234279..26234303 (25 bp)
GAAAACATTTCTCTCCATGGATCGA
LOC_Os06g43620
OsAffx.28085.1.S1_x_at--967--10571Chr06:26234271..26234295 (25 bp)
TTCTCTCCATGGATCGATGAACCAA
LOC_Os06g43620
OsAffx.28085.1.S1_x_at--840--6451Chr06:26234244..26234268 (25 bp)
GATAATTCGATACAGCAGAGTACAC
LOC_Os06g43620
OsAffx.28085.1.S1_x_at--66--251Chr06:26234208..26234232 (25 bp)
ATATACAGCGGTAGACGATCGAATT
LOC_Os06g43620
OsAffx.28085.1.S1_x_at--1063--10491Chr06:26234136..26234160 (25 bp)
TTAAGTTTGTTTAGCTTGCAGGAGT
LOC_Os06g43620
OsAffx.28085.1.S1_x_at--182--6111Chr06:26234115..26234139 (25 bp)
GAGTCGGTCATCAAGTGTGAGATAT
LOC_Os06g43620
OsAffx.28085.1.S1_x_at--733--7471Chr06:26234101..26234125 (25 bp)
GTGTGAGATATTACCGTGTCGTCCG
LOC_Os06g43620
Target Sequence 
GGCATGTTCGACCTGTGCGGCCACAGCCACCAGATCTTCCACGCGCTCGTCATCGCCGGCGCGCTCGCGCACTACGCCGC
CGCCATCGTCTTCATCCAGGCACGCGACGAGATGGGCTGCCCGGCGCCATAGCTAAGCTAGCGATCGAACACACAAGAAA
ACATTTCTCTCCATGGATCGATGAACCAAATGATAATTCGATACAGCAGAGTACACAAGAAGCATATATATACAGCGGTA
GACGATCGAATTAATTGATTTGAGTGGTTTTGTTTTTGTGAGGTTTTTTTTTAAAATTTTTAAGTTTGTTTAGCTTGCAG
GAGTCGGTCATCAAGTGTGAGATATTACCGTGTCGTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28085.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis