Browse Element(s) Details


Os.24754.1.S1_at

Description gb:AK065376.1
DB_XREF= gi:32975394
TID=Os.24754.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013005H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013005H14, full insert sequence.
FL= gb:AK065376.1 gb:AK058461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4361011/11formamidopyrimidine-DNA glycosylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43580NANA6+26207298..26211004hypothetical protein
LOC_Os06g43590Os.6788.1.S1_at11/116+26214503..26217659SNF7 family protein, expressed
LOC_Os06g43600Os.7771.1.S1_at10/116+26226111..26227738Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g43610Os.24754.1.S1_at11/116+26228860..26231827formamidopyrimidine-DNA glycosylase family protein, expressed
LOC_Os06g43620Os.9686.1.S1_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620OsAffx.28085.1.S1_x_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620Os.9686.1.S1_s_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43630OsAffx.15911.1.S1_x_at11/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43630Os.27130.1.S1_at10/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43640Os.11442.1.S1_at11/116+26253172..26258258expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0019104molecular_functionDNA N-glycosylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24754.1.S1_at--90--6791Chr06:26229345..26229369 (25 bp)
GTTAGCACCAGTAGCAAGGGCGAGA
LOC_Os06g43610
Os.24754.1.S1_at--105--5371Chr06:26229238..26229262 (25 bp)
GAAGAGACTCGCTGATGTTCGCAAA
LOC_Os06g43610
Os.24754.1.S1_at--849--10451Chr06:26229189..26229213 (25 bp)
TTAGCTTTAGATGCTCTCCGATGGC
LOC_Os06g43610
Os.24754.1.S1_at--737--31Chr06:26229161..26229185 (25 bp)
ATTGGTGAAATCCTTGTAGCCTTGA
LOC_Os06g43610
Os.24754.1.S1_at--828--10071Chr06:26229135..26229159 (25 bp)
TAGTGAGTTCTTTTCTCTGTGTCTT
LOC_Os06g43610
Os.24754.1.S1_at--244--8731Chr06:26229116..26229140 (25 bp)
TGTCTTGTGCGCTACTGTACCAGAT
LOC_Os06g43610
Os.24754.1.S1_at--938--2771Chr06:26229085..26229109 (25 bp)
AAGATGCCCTCTTGGAAATTGGAAG
LOC_Os06g43610
Os.24754.1.S1_at--471--1051Chr06:26229062..26229086 (25 bp)
AGGTGTAATCGTTCCATACTGGGCA
LOC_Os06g43610
Os.24754.1.S1_at--579--10131Chr06:26229032..26229056 (25 bp)
TATGCTTCTCCTGTGCAACATGAAC
LOC_Os06g43610
Os.24754.1.S1_at--632--231Chr06:26229001..26229025 (25 bp)
ATATCTAGGCTATGTTGCTCGTGTC
LOC_Os06g43610
Os.24754.1.S1_at--862--6891Chr06:26228915..26228939 (25 bp)
GTATACACACATGCTTGTCTATCAT
LOC_Os06g43610
Target Sequence 
GTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAA
TAAATTAAAAGAAAGATAGCAAGAGATGAAGAGACTCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAG
CTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCG
CTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTT
CTCCTGTGCAACATGAACAATGACATATCTAGGCTATGTTGCTCGTGTCAAACCACCACCTAGGTTATCTTTTTTTATTT
TTTTTTAAGACGGAAGAAGTAAGGATGAATGTATACACACATGCTTGTCTATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis