Browse Element(s) Details


OsAffx.28084.1.S1_s_at

Description tigr:9634.m04209
TID=OsAffx.28084.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=proteasome subunit beta type 3 (ec 3.4.25.1) (20s proteasome alpha subunit c) (20s proteasome subunit beta-3). (rice)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4357010/11Proteasome subunit beta type 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43540NANA6+26175583..26179658retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g43550Os.9965.1.S1_at11/116+26182526..26186043CUE domain containing protein, expressed
LOC_Os06g43560Os.12236.1.S1_at11/116+26189058..26197122PX domain containing protein, expressed
LOC_Os06g43570Os.3708.1.S1_at11/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43570OsAffx.28084.1.S1_s_at10/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43570OsAffx.14677.1.S1_at2/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43580NANA6+26207298..26211004hypothetical protein
LOC_Os06g43590Os.6788.1.S1_at11/116+26214503..26217659SNF7 family protein, expressed
LOC_Os06g43600Os.7771.1.S1_at10/116+26226111..26227738Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28084.1.S1_s_at--894--9371Chr06:26201579..26201603 (25 bp)
TCGAGTACAATGGTTCCGCCGTGGT
LOC_Os06g43570
OsAffx.28084.1.S1_s_at--649--1771Chr06:26201490..26201514 (25 bp)
ACCGTCGCGACGGACTTCCAGAGGG
LOC_Os06g43570
OsAffx.28084.1.S1_s_at--1141--3891Chr06:26201294..26201318 (25 bp)
CTGGTGTTCAGGCACAAGCTGTATC
LOC_Os06g43570
OsAffx.28084.1.S1_s_at--974--2211Chr06:26201281..26201305 (25 bp)
ACAAGCTGTATCAACTGCGGGAGGA
LOC_Os06g43570
OsAffx.28084.1.S1_s_at--853--9291NONE
TCCGCTCTCCTCTACGAGAAGAGAT
NONE
OsAffx.28084.1.S1_s_at--51--1271Chr06:26200112..26200136 (25 bp)
AGATTTGGACCATACTTCTGCCAGC
LOC_Os06g43570
OsAffx.28084.1.S1_s_at--889--1671Chr06:26200090..26200114 (25 bp)
AGCCTGTTATCGCTGGACTTGGAGA
LOC_Os06g43570
OsAffx.28084.1.S1_s_at--1016--491Chr06:26199374..26199398 (25 bp)
ATCGGAGTCTCTATATGGTGCTTGT
LOC_Os06g43570
OsAffx.28084.1.S1_s_at--356--5991Chr06:26199106..26199130 (25 bp)
GAGACTATCTCACAAGCTCTGCAGT
LOC_Os06g43570
OsAffx.28084.1.S1_s_at--11--1591Chr06:26199092..26199116 (25 bp)
AGCTCTGCAGTCATCAGTTGATCGT
LOC_Os06g43570
OsAffx.28084.1.S1_s_at--313--411Chr06:26199080..26199104 (25 bp)
ATCAGTTGATCGTGATTGCCTCAGT
LOC_Os06g43570
Target Sequence 
TCGAGTACAATGGTTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCTTCGCGATCGCCAGCGACCGGCGGCTCGGGGTG
CAGCTGCAGACCGTCGCGACGGACTTCCAGAGGGTGTTCAAGATCCACGACAAGCTCTACATCGGCCTCTCCGGCCTCGC
CACCGACGCGCAGACGCTGTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGGGACATGAAGC
CCCAGACCTTCGCCAGCCTCGTCTCCGCTCTCCTCTACGAGAAGAGATTTGGACCATACTTCTGCCAGCCTGTTATCGCT
GGACTTGGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAGGAACTAGCTAAGGATTTCGTTGT
ATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGGAACCTGAAGAACTCTTTG
AGACTATCTCACAAGCTCTGCAGTCATCAGTTGATCGTGATTGCCTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28084.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis