Browse Element(s) Details


Os.12236.1.S1_at

Description gb:AK067701.1
DB_XREF= gi:32977719
TID=Os.12236.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114M13, full insert sequence.
FL= gb:AK067701.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4356011/11PX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43530OsAffx.28083.1.S1_at11/116+26171982..26172317hypothetical protein
LOC_Os06g43540NANA6+26175583..26179658retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g43550Os.9965.1.S1_at11/116+26182526..26186043CUE domain containing protein, expressed
LOC_Os06g43560Os.12236.1.S1_at11/116+26189058..26197122PX domain containing protein, expressed
LOC_Os06g43570Os.3708.1.S1_at11/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43570OsAffx.28084.1.S1_s_at10/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43570OsAffx.14677.1.S1_at2/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43580NANA6+26207298..26211004hypothetical protein
LOC_Os06g43590Os.6788.1.S1_at11/116+26214503..26217659SNF7 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12236.1.S1_at--827--5751Chr06:26189573..26189597 (25 bp)
GACGGTGCTTAATTGGTTATTGGAC
LOC_Os06g43560
Os.12236.1.S1_at--395--3131Chr06:26189519..26189543 (25 bp)
AATTAGCTCTTCTAGTTATGCGGCC
LOC_Os06g43560
Os.12236.1.S1_at--687--6791Chr06:26189505..26189529 (25 bp)
GTTATGCGGCCTTCTCAAAGTTATA
LOC_Os06g43560
Os.12236.1.S1_at--401--2271Chr06:26189428..26189452 (25 bp)
AAATCTTCCTTACATGCAGATCAAG
LOC_Os06g43560
Os.12236.1.S1_at--902--3231Chr06:26189407..26189431 (25 bp)
CAAGCATGTGGTGGTGTTGTATCTC
LOC_Os06g43560
Os.12236.1.S1_at--324--4151Chr06:26189253..26189277 (25 bp)
CCCTTTTTTGCACCATACTTCAATT
LOC_Os06g43560
Os.12236.1.S1_at--1023--9991Chr06:26189207..26189231 (25 bp)
TAGCTGCATGGTTGTATCTTTGTAC
LOC_Os06g43560
Os.12236.1.S1_at--544--6831Chr06:26189178..26189202 (25 bp)
GTTTCAGATGGTGAGTTCCCAGCAG
LOC_Os06g43560
Os.12236.1.S1_at--858--7931Chr06:26189124..26189148 (25 bp)
GGATTAATCTTCTTCACCCATAGAG
LOC_Os06g43560
Os.12236.1.S1_at--1005--1171Chr06:26189082..26189106 (25 bp)
AGTACTTCTTACTCATGCAGTTGCA
LOC_Os06g43560
Os.12236.1.S1_at--20--1251Chr06:26189064..26189088 (25 bp)
AGTTGCACCTCTTCCAGACTGAAAA
LOC_Os06g43560
Target Sequence 
GACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGCGGCCT
TCTCAAAGTTATATGATGAGTATTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACAT
GCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGC
CTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTNCAACTGGAGTGGTAGAGAACATGGGTCC
CCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTC
AGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAGAGTGCTCA
ACTGTTAAATCAGTACTTCTTACTCATGCAGTTGCACCTCTTCCAGACTGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis