Browse Element(s) Details


OsAffx.14677.1.S1_at

Description tigr:9633.m01202
TID=OsAffx.14677.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1387011/11hypothetical protein
LOC_Os06g435702/11Proteasome subunit beta type 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13830Os.9384.1.S1_at11/115+7664659..7665828hypothetical protein
LOC_Os05g13840OsAffx.26873.1.S1_at11/115+7668950..7669685hypothetical protein
LOC_Os05g13850Os.9384.1.S1_at3/115+7671855..7672616hypothetical protein
LOC_Os05g13860Os.52533.1.S1_at11/115+7684289..7687064expressed protein
LOC_Os05g13860Os.51372.1.S1_at1/115+7684289..7687064expressed protein
LOC_Os05g13870OsAffx.14677.1.S1_at11/115+7689003..7689859hypothetical protein
LOC_Os05g13880NANA5+7692544..7692882hypothetical protein
LOC_Os05g13890OsAffx.5954.4.S1_x_at7/115+7695261..7696286hypothetical protein
LOC_Os05g13900Os.9808.1.S1_at11/115+7700949..7702460transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g13900Os.57426.1.S1_x_at3/115+7700949..7702460transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g13910OsAffx.26069.1.S1_x_at3/115+7712022..7715593hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14677.1.S1_at--617--8252Chr06:3016652..3016834 (25 bp)
GGCAGCGGCCGTAGATTGATAATGT
NONE
OsAffx.14677.1.S1_at--546--5072Chr06:3016651..3016833 (25 bp)
GCAGCGGCCGTAGATTGATAATGTT
NONE
OsAffx.14677.1.S1_at--766--3392Chr06:3016650..3016832 (25 bp)
CAGCGGCCGTAGATTGATAATGTTT
NONE
OsAffx.14677.1.S1_at--1102--1612Chr06:3016649..3016831 (25 bp)
AGCGGCCGTAGATTGATAATGTTTG
NONE
OsAffx.14677.1.S1_at--251--8773Chr06:3016630..3016654 (25 bp)
TGTTTGGGTTTGGTGAATTTGAAGG
NONE
OsAffx.14677.1.S1_at--328--68910Chr03:31532563..31532584 (22 bp)
GTATACTCACCACCTCTAATGATGA
NONE
OsAffx.14677.1.S1_at--723--101710Chr03:31532564..31532584 (21 bp)
TATACTCACCACCTCTAATGATGAG
NONE
OsAffx.14677.1.S1_at--320--9914Chr02:10990101..10990123 (23 bp)
TACTCACCACCTCTAATGATGAGTG
NONE
OsAffx.14677.1.S1_at--348--2014Chr02:10990102..10990123 (22 bp)
ACTCACCACCTCTAATGATGAGTGG
NONE
OsAffx.14677.1.S1_at--418--3371Chr05:7689036..7689380 (25 bp)
CACCTCTAATGATGAGTGGTACATG
LOC_Os05g13870
OsAffx.14677.1.S1_at--761--4291Chr05:7689034..7689378 (25 bp)
CCTCTAATGATGAGTGGTACATGAT
LOC_Os05g13870
Target Sequence 
GGCAGCGGCCGTAGATTGATAATGTTTGGGTTTGGTGAATTTGAAGGGGGTATACTCACCACCTCTAATGATGAGTGGTA
CATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis