Browse Element(s) Details


Os.9384.1.S1_at

Description gb:AK070646.1
DB_XREF= gi:32980670
TID=Os.9384.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063L01, full insert sequence.
FL= gb:AK070646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1383011/11hypothetical protein
LOC_Os05g138503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13810Os.55350.1.S1_at11/115+7651907..7652569expressed protein
LOC_Os05g13820OsAffx.26872.1.S1_at11/115+7662273..7663148hypothetical protein
LOC_Os05g13830Os.9384.1.S1_at11/115+7664659..7665828hypothetical protein
LOC_Os05g13840OsAffx.26873.1.S1_at11/115+7668950..7669685hypothetical protein
LOC_Os05g13850Os.9384.1.S1_at3/115+7671855..7672616hypothetical protein
LOC_Os05g13860Os.52533.1.S1_at11/115+7684289..7687064expressed protein
LOC_Os05g13860Os.51372.1.S1_at1/115+7684289..7687064expressed protein
LOC_Os05g13870OsAffx.14677.1.S1_at11/115+7689003..7689859hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9384.1.S1_at--668--8051Chr05:7665188..7665212 (25 bp)
GGAGCCAAAGTCTGAACCCAAGTCT
LOC_Os05g13830
Os.9384.1.S1_at--224--8272Chr05:7672035..7672059 (25 bp)
GGCAGAATCGCAACCAGAACCAAAG
LOC_Os05g13850
Os.9384.1.S1_at--621--3292Chr05:7672003..7672027 (25 bp)
CAAAGTCTGAGTCGAAGGCTGAACC
LOC_Os05g13850
Os.9384.1.S1_at--1103--4392Chr05:7671903..7671927 (25 bp)
GCCAGAGTCTAAGCCCGAGCCAAAA
LOC_Os05g13850
Os.9384.1.S1_at--115--10632Chr05:7671849..7671873 (25 bp)
TTCGTCGGCCTACCCATGATGGAGA
NONE
Os.9384.1.S1_at--605--6132Chr05:7671812..7671836 (25 bp)
GAGGGCATCTTGCTTGCTGCACGAT
NONE
Os.9384.1.S1_at--424--3852Chr05:7671796..7671820 (25 bp)
CTGCACGATTTAGCTACTGATGAGA
NONE
Os.9384.1.S1_at--933--7172Chr05:7671757..7671781 (25 bp)
GTCGGAGCACTAGGAAATGGCCATT
NONE
Os.9384.1.S1_at--481--8452Chr05:7671740..7671764 (25 bp)
TGGCCATTGGCCATTTCTGGAATAA
NONE
Os.9384.1.S1_at--779--9072Chr05:7671689..7671713 (25 bp)
TGCTTTATTTCCCTCATTCTTTCAT
NONE
Os.9384.1.S1_at--1048--9152Chr05:7671643..7671667 (25 bp)
TGCGCCAGCTGGTGTAATTCACTTA
NONE
Target Sequence 
GGAGCCAAAGTCTGAACCCAAGTCTGAACNTAAATCGGAGCCTACCNCACAGACTNAACCAAAGGCAGAATCGCAACCAG
AACCAAAGACAGAGCCAAAGTCTGAGTCGAAGGCTGAACCGAAGCCAGAGCGAAAGTCATACNCAAAGTCAAAACCAGAA
CCAGAATCCAAGCCAGAAGCAAAAACAGAACCACNGCCAGAGTCTAAGCCCGAGCCAAAACCCGAGTCAGCCCCAAAGAA
GGAAACGCCTTCGTCGGCCTACCCATGATGGAGATCCATGGAGATCGAGGGCATCTTGCTTGCTGCACGATTTAGCTACT
GATGAGATTATTTTGCTGAAGGTCGGAGCACTAGGAAATGGCCATTGGCCATTTCTGGAATAAATAAGTGACGANCTAGC
TTTATTCTTTGCTTTATTTCCCTCATTCTTTCATGTTTTTTTCCGGATGTGCCACTGCGCCAGCTGGTGTAATTCACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis