Browse Element(s) Details


OsAffx.26872.1.S1_at

Description tigr:9633.m01198
TID=OsAffx.26872.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1382011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13810Os.55350.1.S1_at11/115+7651907..7652569expressed protein
LOC_Os05g13820OsAffx.26872.1.S1_at11/115+7662273..7663148hypothetical protein
LOC_Os05g13830Os.9384.1.S1_at11/115+7664659..7665828hypothetical protein
LOC_Os05g13840OsAffx.26873.1.S1_at11/115+7668950..7669685hypothetical protein
LOC_Os05g13850Os.9384.1.S1_at3/115+7671855..7672616hypothetical protein
LOC_Os05g13860Os.52533.1.S1_at11/115+7684289..7687064expressed protein
LOC_Os05g13860Os.51372.1.S1_at1/115+7684289..7687064expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26872.1.S1_at--230--4651Chr05:7663066..7663090 (25 bp)
GCGGTGGTGAAAACACTATGGGTAC
LOC_Os05g13820
OsAffx.26872.1.S1_at--370--2471Chr05:7663055..7663079 (25 bp)
AACACTATGGGTACCAGTGGCGGAA
LOC_Os05g13820
OsAffx.26872.1.S1_at--245--1391Chr05:7663050..7663074 (25 bp)
TATGGGTACCAGTGGCGGAAACCCT
LOC_Os05g13820
OsAffx.26872.1.S1_at--1089--7811Chr05:7663022..7663046 (25 bp)
GGCTACGGTGGCAGAGGCCCTAGGG
LOC_Os05g13820
OsAffx.26872.1.S1_at--223--4571Chr05:7662844..7662864 (21 bp)
GCGCGCTTAGGCAAGTGGGTGGCTT
LOC_Os05g13820
OsAffx.26872.1.S1_at--295--6311Chr05:7662811..7662835 (25 bp)
GATGACGGCGGTGGGTTTGCAAAGT
LOC_Os05g13820
OsAffx.26872.1.S1_at--783--5132Chr05:7656533..7656552 (20 bp)
GCAAAGTGCCTCCTAGATGCAGAGT
NONE
OsAffx.26872.1.S1_at--956--1131Chr05:7662675..7662813 (25 bp)
AGTGCCTCCTAGATGCAGAGTTTGT
LOC_Os05g13820
OsAffx.26872.1.S1_at--618--9251Chr05:7662669..7662807 (25 bp)
TCCTAGATGCAGAGTTTGTGCCCAA
LOC_Os05g13820
OsAffx.26872.1.S1_at--7--9051Chr05:7662662..7662682 (21 bp)
TGCAGAGTTTGTGCCCAAGACTGAG
LOC_Os05g13820
OsAffx.26872.1.S1_at--491--7411Chr05:7662606..7662630 (25 bp)
GTGATAGGATTCAAGACTGTGGAAA
LOC_Os05g13820
Target Sequence
GCGGTGGTGAAAACACTATGGGTACCAGTGGCGGAAACCCTAGGGGCTACGGTGGCAGAGGCCCTAGGGGTTGCAGTGGT
GAAAGCCCTAGAGGCTACAGCAACAGCAAGCCTACGGGGACGGTGGAGGGTTGGGTTGCGGCGCGCTTAGGCAAGTGGGT
GGCTTGTGGCGGTGATGACGGCGGTGGGTTTGCAAAGTGCCTCCTAGATGCAGAGTTTGTGCCCAAGACTGAGTTCCAGG
AATGTGGGGGAGTGGAGGAGAAGGGTGATAGGATTCAAGACTGTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis