Browse Element(s) Details


OsAffx.26873.1.S1_at

Description tigr:9633.m01205
TID=OsAffx.26873.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1384011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13810Os.55350.1.S1_at11/115+7651907..7652569expressed protein
LOC_Os05g13820OsAffx.26872.1.S1_at11/115+7662273..7663148hypothetical protein
LOC_Os05g13830Os.9384.1.S1_at11/115+7664659..7665828hypothetical protein
LOC_Os05g13840OsAffx.26873.1.S1_at11/115+7668950..7669685hypothetical protein
LOC_Os05g13850Os.9384.1.S1_at3/115+7671855..7672616hypothetical protein
LOC_Os05g13860Os.52533.1.S1_at11/115+7684289..7687064expressed protein
LOC_Os05g13860Os.51372.1.S1_at1/115+7684289..7687064expressed protein
LOC_Os05g13870OsAffx.14677.1.S1_at11/115+7689003..7689859hypothetical protein
LOC_Os05g13880NANA5+7692544..7692882hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26873.1.S1_at--438--7591Chr05:7669340..7669422 (25 bp)
GGGTTGGGTTTTGATGTGCCTCCCA
LOC_Os05g13840
OsAffx.26873.1.S1_at--109--8871Chr05:7669329..7669349 (21 bp)
TGATGTGCCTCCCAGATGCAGTAAG
LOC_Os05g13840
OsAffx.26873.1.S1_at--267--651Chr05:7669314..7669338 (25 bp)
ATGCAGTAAGCAACACCGTCGAGGA
LOC_Os05g13840
OsAffx.26873.1.S1_at--288--2731Chr05:7669307..7669331 (25 bp)
AAGCAACACCGTCGAGGAATGTGGT
LOC_Os05g13840
OsAffx.26873.1.S1_at--830--7831Chr05:7669285..7669309 (25 bp)
GGTACTCGTGAAGATACGACCACTT
LOC_Os05g13840
OsAffx.26873.1.S1_at--337--5351Chr05:7669276..7669300 (25 bp)
GAAGATACGACCACTTATTTGAAGA
LOC_Os05g13840
OsAffx.26873.1.S1_at--361--8391Chr05:7669250..7669274 (25 bp)
GGCGAATATTTTGTTCTGGATACAC
LOC_Os05g13840
OsAffx.26873.1.S1_at--79--2771Chr05:7669225..7669249 (25 bp)
AAGATGGGTACAACGACGACCAGTT
LOC_Os05g13840
OsAffx.26873.1.S1_at--413--6931Chr05:7669132..7669156 (25 bp)
GTAGGATTCAAGACTATGGCGAAGT
LOC_Os05g13840
OsAffx.26873.1.S1_at--228--8611Chr05:7668996..7669020 (25 bp)
TGGTGCACTCACATCATGGAGGGAT
LOC_Os05g13840
OsAffx.26873.1.S1_at--378--831Chr05:7668981..7669005 (25 bp)
ATGGAGGGATATGGCCTACTGCCCG
LOC_Os05g13840
Target Sequence 
GGGTTGGGTTTTGATGTGCCTCCCAGATGCAGTAAGCAACACCGTCGAGGAATGTGGTACTCGTGAAGATACGACCACTT
ATTTGAAGAAGGCGAATATTTTGTTCTGGATACACAAGATGGGTACAACGACGACCAGTTCTCCTCAGACCAGGAGCTTG
TGCCCGAGACTGAGTTCCAGGATTGTGGGGAAGTGGAGGAGAAGGGTGGTAGGATTCAAGACTATGGCGAAGTGGAGGAG
AAGGGTGGGGTTTCAAGATTGTAGGGAAACAGAGGAGAATGTCGGTGGGATTCAAGATTGTAGGGAAGTGGAGAAGGGTG
GTGTGATCAGTGGCAGCAGCAGCATGGTGCACTCACATCATGGAGGGATATGGCCTACTGCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis