Browse Element(s) Details


Os.52533.1.S1_at

Description gb:AK067770.1
DB_XREF= gi:32977788
TID=Os.52533.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120H22, full insert sequence.
FL= gb:AK067770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1386011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13820OsAffx.26872.1.S1_at11/115+7662273..7663148hypothetical protein
LOC_Os05g13830Os.9384.1.S1_at11/115+7664659..7665828hypothetical protein
LOC_Os05g13840OsAffx.26873.1.S1_at11/115+7668950..7669685hypothetical protein
LOC_Os05g13850Os.9384.1.S1_at3/115+7671855..7672616hypothetical protein
LOC_Os05g13860Os.52533.1.S1_at11/115+7684289..7687064expressed protein
LOC_Os05g13860Os.51372.1.S1_at1/115+7684289..7687064expressed protein
LOC_Os05g13870OsAffx.14677.1.S1_at11/115+7689003..7689859hypothetical protein
LOC_Os05g13880NANA5+7692544..7692882hypothetical protein
LOC_Os05g13890OsAffx.5954.4.S1_x_at7/115+7695261..7696286hypothetical protein
LOC_Os05g13900Os.9808.1.S1_at11/115+7700949..7702460transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g13900Os.57426.1.S1_x_at3/115+7700949..7702460transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g13910OsAffx.26069.1.S1_x_at3/115+7712022..7715593hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52533.1.S1_at--676--7451Chr05:7686520..7686544 (25 bp)
GTGTCGTGACATTATCAGGCTCTAA
LOC_Os05g13860
Os.52533.1.S1_at--784--4811Chr05:7686538..7686562 (25 bp)
GCTCTAAGGAAGGACATGGCGATCT
LOC_Os05g13860
Os.52533.1.S1_at--727--151Chr05:7686580..7686604 (25 bp)
ATTATCAAGGTAACAGCGGCCAGTG
LOC_Os05g13860
Os.52533.1.S1_at--642--1111Chr05:7686601..7686625 (25 bp)
AGTGTAGTGCCGGTTAATCTTGTAT
LOC_Os05g13860
Os.52533.1.S1_at--87--5131Chr05:7686645..7686669 (25 bp)
GCACACTGCCGATGTAGTACTATGT
LOC_Os05g13860
Os.52533.1.S1_at--596--7011Chr05:7686661..7686685 (25 bp)
GTACTATGTCTCTATGCATGCTTGT
LOC_Os05g13860
Os.52533.1.S1_at--684--7631Chr05:7686736..7686760 (25 bp)
GGGACTGCCAATTTTCTACATTGAT
LOC_Os05g13860
Os.52533.1.S1_at--315--8831Chr05:7686757..7686781 (25 bp)
TGATAAGTTTAGTGTTTCCCCTGGA
LOC_Os05g13860
Os.52533.1.S1_at--982--6791Chr05:7686909..7686933 (25 bp)
GTTTTGTACCCTCATAACCATCTAG
LOC_Os05g13860
Os.52533.1.S1_at--139--9831Chr05:7686961..7686985 (25 bp)
TAAAGTGGTTGTACCCTATAGCAAC
LOC_Os05g13860
Os.52533.1.S1_at--362--3711Chr05:7686986..7687010 (25 bp)
CTAGCAGGGCTTTACATTTTGTTCT
LOC_Os05g13860
Target Sequence 
GTGTCGTGACATTATCAGGCTCTAAGGAAGGACATGGCGATCTGCGAGAGCAGCATTGATATTATCAAGGTAACAGCGGC
CAGTGTAGTGCCGGTTAATCTTGTATGAATACAGTCTTTATATATGCACACTGCCGATGTAGTACTATGTCTCTATGCAT
GCTTGTAACAATGCCTAAAAGACCAGGGAGAGGCTATGCAGAGGGATTGGGGAATGGGGACTGCCAATTTTCTACATTGA
TAAGTTTAGTGTTTCCCCTGGAAGGGATATGGCAGGGATATTCACAAAGTGCAGAATACGTGATTCAGTTGGAGAAAGGC
AACACATGTGGAAGATGGTTTGCATAATAAATTATCTTAGGTTAAACTAATGTTTTTTTCTGATCTGGTGTTTTGTACCC
TCATAACCATCTAGCTGTTGTAATTCATCAAGTACCCATGTTAAAGTGGTTGTACCCTATAGCAACCTAGCAGGGCTTTA
CATTTTGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis