Browse Element(s) Details


Os.9808.1.S1_at

Description gb:AF337054.1
DB_XREF= gi:18478605
TID=Os.9808.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9808 (NCBI UniGene Cluster)
DEF=Oryza sativa repetitive proline rich protein mRNA, complete cds.
PROD=repetitive proline rich protein
FL= gb:AF337054.1 gb:AK100217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1390011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13860Os.52533.1.S1_at11/115+7684289..7687064expressed protein
LOC_Os05g13860Os.51372.1.S1_at1/115+7684289..7687064expressed protein
LOC_Os05g13870OsAffx.14677.1.S1_at11/115+7689003..7689859hypothetical protein
LOC_Os05g13880NANA5+7692544..7692882hypothetical protein
LOC_Os05g13890OsAffx.5954.4.S1_x_at7/115+7695261..7696286hypothetical protein
LOC_Os05g13900Os.9808.1.S1_at11/115+7700949..7702460transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g13900Os.57426.1.S1_x_at3/115+7700949..7702460transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g13910OsAffx.26069.1.S1_x_at3/115+7712022..7715593hypothetical protein
LOC_Os05g13920Os.45212.1.S1_x_at1/115+7716906..7721111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13920Os.31497.2.S1_x_at1/115+7716906..7721111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13930NANA5+7721459..7722821hypothetical protein
LOC_Os05g13940Os.57426.1.S1_s_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.3.S1_a_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.2.S1_a_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.57426.1.S1_x_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.1.S1_x_at6/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9808.1.S1_at--971--9271Chr05:7701435..7701459 (25 bp)
TCCGATGCCTGAACCTGAACCAAAG
LOC_Os05g13900
Os.9808.1.S1_at--871--2631Chr05:7701341..7701365 (25 bp)
AAGCCTGGACCGAAACCTATAGCAC
LOC_Os05g13900
Os.9808.1.S1_at--1128--6371Chr05:7701262..7701286 (25 bp)
GATCGCTGGAGACCGAGCATTTGCT
LOC_Os05g13900
Os.9808.1.S1_at--960--10271Chr05:7701243..7701267 (25 bp)
TTTGCTGGCTGCACGGTTGAGGCAC
LOC_Os05g13900
Os.9808.1.S1_at--461--5791Chr05:7701217..7701241 (25 bp)
GACGACATTATTTCACCCGAGGAAG
LOC_Os05g13900
Os.9808.1.S1_at--249--5311Chr05:7701196..7701220 (25 bp)
GAAGGAGCGCTAGCGAGTCACTACA
LOC_Os05g13900
Os.9808.1.S1_at--611--3491Chr05:7701093..7701117 (25 bp)
CATGTTGGTTTTTCGGATGTGCCAC
LOC_Os05g13900
Os.9808.1.S1_at--765--8691Chr05:7701038..7701062 (25 bp)
TGTGCCTACCGTCATTTTTATTACC
LOC_Os05g13900
Os.9808.1.S1_at--375--9971Chr05:7701017..7701041 (25 bp)
TACCGTGTCTGTGACATTCTATTGT
LOC_Os05g13900
Os.9808.1.S1_at--515--7151Chr05:7700994..7701018 (25 bp)
GTCTATTGGCATTATTCTCATTGTA
LOC_Os05g13900
Os.9808.1.S1_at--121--10215Chr06:5050849..5050868 (20 bp)
TATTTGTCATCATTTTTACCCAGCT
NONE
Target Sequence 
TCCGATGCCTGAACCTGAACCAAAGCCTAAGCCCGAACCAAAGCCAGAGCCTAAACCATACCCAGAACCAAAGCCTAAAC
TGAAACCTGAACCTAAGCCTGGACCGAAACCTATAGCACCGCCGAACAAGCACAAGCCGCCGCACATGCCACCAGCGACA
AACCAGTGACGGCGATCGCTGGAGACCGAGCATTTGCTGGCTGCACGGTTGAGGCACCGACGACATTATTTCACCCGAGG
AAGGAGCGCTAGCGAGTCACTACACTGTACCGTTTCTGGAATAAAGTGATGAGCTAGCTTTCTGCTTGCCTTTTCTTTTC
CTCTCTTATTTTCCTTTTATTTCATGTTGGTTTTTCGGATGTGCCACTGCTAGCTAGTGTAATTAAATTATTTATTATGT
GCCTACCGTCATTTTTATTACCGTGTCTGTGACATTCTATTGTCTATTGGCATTATTCTCATTGTAAAATCTTTTGGTAA
TATTATTTGTCATCATTTTTACCCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis