Browse Element(s) Details


Os.57426.1.S1_s_at

Description gb:AY224438.1
DB_XREF= gi:29367368
TID=Os.57426.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57426 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 23221 proline-rich protein mRNA, complete cds.
PROD=proline-rich protein
FL= gb:AY224438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1394011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13900Os.9808.1.S1_at11/115+7700949..7702460transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g13900Os.57426.1.S1_x_at3/115+7700949..7702460transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g13910OsAffx.26069.1.S1_x_at3/115+7712022..7715593hypothetical protein
LOC_Os05g13920Os.45212.1.S1_x_at1/115+7716906..7721111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13920Os.31497.2.S1_x_at1/115+7716906..7721111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13930NANA5+7721459..7722821hypothetical protein
LOC_Os05g13940Os.57426.1.S1_s_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.3.S1_a_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.2.S1_a_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.57426.1.S1_x_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.1.S1_x_at6/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13950Os.10033.1.S1_at11/115+7741418..7747624Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os05g13960Os.57135.1.S1_at11/115+7747779..7749727transposon protein, putative, Pong sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57426.1.S1_s_at--888--1371Chr05:7726452..7726476 (25 bp)
AGAGCCCAAACCATATCCAGAGCCT
LOC_Os05g13940
Os.57426.1.S1_s_at--704--3191Chr05:7726446..7726470 (25 bp)
CAAACCATATCCAGAGCCTAAACCG
LOC_Os05g13940
Os.57426.1.S1_s_at--959--191Chr05:7726440..7726464 (25 bp)
ATATCCAGAGCCTAAACCGGATCCC
LOC_Os05g13940
Os.57426.1.S1_s_at--407--9211Chr05:7726437..7726461 (25 bp)
TCCAGAGCCTAAACCGGATCCCAAA
LOC_Os05g13940
Os.57426.1.S1_s_at--913--3952Chr05:7726363..7726387 (25 bp)
CGGAGCCAAAACCAGAGCCGAAGCC
LOC_Os05g13940
Os.57426.1.S1_s_at--999--4451Chr05:7726275..7726299 (25 bp)
GCCTGAACCGAAACCTAAGCCTAAG
LOC_Os05g13940
Os.57426.1.S1_s_at--272--5471Chr05:7726272..7726296 (25 bp)
TGAACCGAAACCTAAGCCTAAGCCT
LOC_Os05g13940
Os.57426.1.S1_s_at--27--11Chr05:7726269..7726293 (25 bp)
ACCGAAACCTAAGCCTAAGCCTGAG
LOC_Os05g13940
Os.57426.1.S1_s_at--466--1751Chr05:7726239..7726263 (25 bp)
ACCTGAAGCACCTCCGAAGAAGCAC
LOC_Os05g13940
Os.57426.1.S1_s_at--325--5391Chr05:7726235..7726259 (25 bp)
GAAGCACCTCCGAAGAAGCACAAGC
LOC_Os05g13940
Os.57426.1.S1_s_at--362--3571Chr05:7726203..7726227 (25 bp)
CATACCGCCAGCGACCGACCAGTGA
LOC_Os05g13940
Target Sequence 
AGAGCCCAAACCATATCCAGAGCCTAAACCGGATCCCAAACCAGAACCCAAACCACACCCAGAACCAAAGCCAGAGCCCA
AGCCACAGCCGGAGCCAAAACCAGAGCCGAAGCCTGAACCTAAACCAGAGCCTAAGCCCGAACCAAAACCGGAGCCTAAA
CCATACCCAGAGCCAAAGCCTGAACCGAAACCTAAGCCTAAGCCTGAGCCAAAACCTGAAGCACCTCCGAAGAAGCACAA
GCCGCCGCACATACCGCCAGCGACCGACCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57426.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis