Browse Element(s) Details


Os.10033.1.S1_at

Description gb:AK068760.1
DB_XREF= gi:32978785
TID=Os.10033.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-036-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160I02, full insert sequence.
FL= gb:AK068760.1 gb:AK067567.1 gb:AK104688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1395011/11Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13920Os.45212.1.S1_x_at1/115+7716906..7721111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13920Os.31497.2.S1_x_at1/115+7716906..7721111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13930NANA5+7721459..7722821hypothetical protein
LOC_Os05g13940Os.57426.1.S1_s_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.3.S1_a_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.2.S1_a_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.57426.1.S1_x_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.1.S1_x_at6/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13950Os.10033.1.S1_at11/115+7741418..7747624Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os05g13960Os.57135.1.S1_at11/115+7747779..7749727transposon protein, putative, Pong sub-class, expressed
LOC_Os05g13970Os.51904.1.S1_at11/115+7754764..7760288Phosphorylase family protein, expressed
LOC_Os05g13980NANA5+7764401..7764640hypothetical protein
LOC_Os05g13990NANA5+7767619..7770923transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10033.1.S1_at--299--3011Chr05:7743076..7743100 (25 bp)
AATGCATTCAATCGACAGTGACGGA
LOC_Os05g13950
Os.10033.1.S1_at--181--10151Chr05:7743044..7743068 (25 bp)
TATCCAGTGCAGACTTTGACTTCTA
LOC_Os05g13950
Os.10033.1.S1_at--217--4311Chr05:7741720..7741744 (25 bp)
CCTTTGAGTTACAGTGGGACGCGCT
LOC_Os05g13950
Os.10033.1.S1_at--1023--7271Chr05:7741665..7741689 (25 bp)
GTGCCATCCTTTTTTGATACATTGT
LOC_Os05g13950
Os.10033.1.S1_at--145--591Chr05:7741590..7741614 (25 bp)
ATCCACTTGTCATGGCATGTTCTGG
LOC_Os05g13950
Os.10033.1.S1_at--771--31Chr05:7741544..7741568 (25 bp)
ATTGTTCTTGTCTTATCGTCAACCG
LOC_Os05g13950
Os.10033.1.S1_at--1014--9171Chr05:7741519..7741543 (25 bp)
TGCCATTACCTACCGTAACGTTGCA
LOC_Os05g13950
Os.10033.1.S1_at--437--6971Chr05:7741489..7741513 (25 bp)
GTAGCTGTATTCCTATGTTTCGGAC
LOC_Os05g13950
Os.10033.1.S1_at--180--751Chr05:7741475..7741499 (25 bp)
ATGTTTCGGACTTGCAGAGTGCGGA
LOC_Os05g13950
Os.10033.1.S1_at--300--6111Chr05:7741459..7741483 (25 bp)
GAGTGCGGAATGTCGTTGCTTCCTA
LOC_Os05g13950
Os.10033.1.S1_at--580--471Chr05:7741435..7741459 (25 bp)
ATCTGCCTGAGCCTTATGAACTGAA
LOC_Os05g13950
Target Sequence 
AATGCATTCAATCGACAGTGACGGAAAGGTCATATCCAGTGCAGACTTTGACTTCTATATTGATGAGGACATTATTCATG
TTGTTGAATCCAAGTTAACCAAGAACCATGGTGATTACTTTTTGAGACAGATTTTGAAGTTTGAGGAGATGATTACGCAG
CTGGATAAAGTACAATTTGACTGAACCTGCTATCATCAGGGCTGAAGCTCTCCTTTGAGTTACAGTGGGACGCGCTGTTG
GTGATGGATAGTAATGATAAATTTTTGTGCCATCCTTTTTTGATACATTGTTGACATGAGTTAAATCCTCGCTAAAAAGT
ACTCTAGGTGCTAACTATCGCATCCACTTGTCATGGCATGTTCTGGTTTGAAGAATGCCAACTTTAAATTGTTCTTGTCT
TATCGTCAACCGTGCCATTACCTACCGTAACGTTGCAAAGTTGTAGCTGTATTCCTATGTTTCGGACTTGCAGAGTGCGG
AATGTCGTTGCTTCCTATCTGCCTGAGCCTTATGAACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis