Browse Element(s) Details


Os.51372.1.S1_at

Description gb:AK062665.1
DB_XREF= gi:32972683
TID=Os.51372.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F09, full insert sequence.
FL= gb:AK062665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3653411/11expressed protein
LOC_Os05g138601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36520OsAffx.13200.2.S1_x_at1/113+20176144..20177246hypothetical protein
LOC_Os03g36530Os.56169.1.S1_at11/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36530Os.51655.2.S1_x_at1/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36534Os.51372.1.S1_at11/113+20199243..20199812expressed protein
LOC_Os03g36540Os.22677.2.S1_at11/113+20202305..20204631Magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed
LOC_Os03g36550Os.23305.1.A1_x_at5/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550Os.23305.1.A1_at4/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550OsAffx.524.1.S1_at1/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36560Os.13392.1.S1_at11/113+20218755..20224247Peroxidase 27 precursor, putative, expressed
LOC_Os03g36560OsAffx.25249.1.S1_at2/113+20218755..20224247Peroxidase 27 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51372.1.S1_at--277--2271Chr03:20199318..20199342 (25 bp)
AAATCGCGTTCCTAGCTTTGTACCG
LOC_Os03g36534
Os.51372.1.S1_at--1097--9991Chr03:20199330..20199354 (25 bp)
TAGCTTTGTACCGTGCCCAGACAAC
LOC_Os03g36534
Os.51372.1.S1_at--88--10671Chr03:20199375..20199399 (25 bp)
TTCCTCCGTCCCAGCGCGAAGGAGA
LOC_Os03g36534
Os.51372.1.S1_at--922--4971Chr03:20199458..20199482 (25 bp)
GCATCGCTATGGAACTCGCCGGTGG
LOC_Os03g36534
Os.51372.1.S1_at--176--4391Chr03:20199491..20199515 (25 bp)
GCCACTTGAGGGTGGGTTACCATCG
LOC_Os03g36534
Os.51372.1.S1_at--767--4511Chr03:20199579..20199603 (25 bp)
GCCGCAACCAGATCGACTAGTCAAG
LOC_Os03g36534
Os.51372.1.S1_at--431--1171Chr03:20199629..20199653 (25 bp)
AGTCAAGCCAGATCGACGACCGGAT
LOC_Os03g36534
Os.51372.1.S1_at--1058--6052Chr05:7685807..7685831 (25 bp)
GAGTTAAACTTTGCCATCTTCCTTT
LOC_Os05g13860
Os.51372.1.S1_at--945--3551Chr03:20199709..20199733 (25 bp)
CATCTTCCTTTCACTCAATTTGTTG
LOC_Os03g36534
Os.51372.1.S1_at--135--3191Chr03:20199724..20199748 (25 bp)
CAATTTGTTGTTTTGTCTACCATGA
LOC_Os03g36534
Os.51372.1.S1_at--904--7151Chr03:20199738..20199762 (25 bp)
GTCTACCATGATTGTTTCGCACGAA
LOC_Os03g36534
Target Sequence 
AAATCGCGTTCCTAGCTTTGTACCGTGCCCAGACAACCCACCAATCTGCCATGCCGTTTCCTCCGTCCCAGCGCGAAGGA
GAGCTCGCGACTCACGAGAGGAGTCGTCCGCTCAGCTGCGCCCCGGTTGCCGCCGCCTCCGCATCGCTATGGAACTCGCC
GGTGGCGCAGCGAGCCACTTGAGGGTGGGTTACCATCGTCGCTGCCCGCAACCAACGCCGTCGCCCTGCCCACAGGACCA
CAACACCATGCCTCCGCCGACGCCGCAACCAGATCGACTAGTCAAGCATCCCCCGTGCCGATGAAATCCCCAGTCAAGCC
AGATCGACGACCGGATCCGATGCACCGGCCAGAAGAATGGGCTGCTCAGTTGTAGGTGAGTTAAACTTTGCCATCTTCCT
TTCACTCAATTTGTTGTTTTGTCTACCATGATTGTTTCGCACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis