Browse Element(s) Details


Os.51655.2.S1_x_at

Description gb:AK063323.1
DB_XREF= gi:32973341
TID=Os.51655.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H04, full insert sequence.
FL= gb:AK063323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4072011/11FAD-binding domain-containing protein, putative, expressed
LOC_Os03g365301/11FAD-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40660Os.53180.1.S1_at11/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.2.S1_x_at7/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.3.S1_x_at6/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.27088.1.A1_x_at4/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40670NANA8+25619077..25620483Zinc knuckle family protein
LOC_Os08g40680Os.4867.1.S1_at11/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40680OsAffx.17441.1.S1_at2/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40690Os.4681.1.S1_at11/118+25629614..25630980Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os08g40700OsAffx.17442.1.S1_at11/118+25632130..25633661expressed protein
LOC_Os08g40710Os.49985.1.S1_at11/118+25634719..25636039retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g40720Os.51655.1.S1_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40720Os.51655.2.S1_x_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40730OsAffx.6096.1.S1_at11/118+25640800..25641639hypothetical protein
LOC_Os08g40740Os.9347.1.S1_at1/118+25645613..25646518Glycosyl hydrolases family 18 protein
LOC_Os08g40750OsAffx.29612.1.S1_at11/118+25648342..25652648hypothetical protein
LOC_Os08g40750Os.25139.1.A1_at5/118+25648342..25652648hypothetical protein
LOC_Os08g40750OsAffx.828.1.S1_x_at1/118+25648342..25652648hypothetical protein
LOC_Os08g40760Os.27691.2.S1_x_at2/118+25655075..25656004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40760Os.27691.1.S1_x_at1/118+25655075..25656004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40770Os.27691.1.S1_x_at4/118+25656258..25659518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40780OsAffx.17443.1.S1_at10/118+25661510..25663932hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51655.2.S1_x_at--499--6131Chr08:25637677..25637701 (25 bp)
GAGGGCATCGGCGTTCATCCGCGAC
LOC_Os08g40720
Os.51655.2.S1_x_at--84--8852Chr03:20198020..20198044 (25 bp)
TGATCCGCTACGTCAAGGCGTCGAC
LOC_Os03g36530
Os.51655.2.S1_x_at--1068--5631Chr08:25637544..25637568 (25 bp)
GACAGCGTCGAGTTCGACACGACCA
LOC_Os08g40720
Os.51655.2.S1_x_at--605--7351Chr08:25637367..25637391 (25 bp)
GTGAAGGACGCGTACGATCCCGATG
LOC_Os08g40720
Os.51655.2.S1_x_at--165--9231Chr08:25637160..25637358 (25 bp)
TCCAGTGAGTGGAGCGACGCCTACG
LOC_Os08g40720
Os.51655.2.S1_x_at--200--1831Chr08:25637144..25637168 (25 bp)
ACGCCTACGCCGATGCATGATCGAA
LOC_Os08g40720
Os.51655.2.S1_x_at--316--6391Chr08:25637126..25637150 (25 bp)
GATCGAACTCGATCGTCAGAACATG
LOC_Os08g40720
Os.51655.2.S1_x_at--686--5491Chr08:25637108..25637132 (25 bp)
GAACATGACACGTACGACGGCTTGT
LOC_Os08g40720
Os.51655.2.S1_x_at--890--9931Chr08:25637080..25637104 (25 bp)
TACGTGTAGTGTGTGTGGCCATGCT
LOC_Os08g40720
Os.51655.2.S1_x_at--340--4331Chr08:25637062..25637086 (25 bp)
CCATGCTATGCAGGCCGCGTGAATA
LOC_Os08g40720
Os.51655.2.S1_x_at--1022--6991Chr08:25637003..25637027 (25 bp)
GTACTGCTACATGACTGCAATTTCT
LOC_Os08g40720
Target Sequence 
GAGGGCATCGGCGTTCATCCGCGACGCGCAGCGGCTGCTCGACATGAACCCCGGCGCGCTCTGCGGCGGCGAGAACGGCG
GCATCCTGATCCGCTACGTCAAGGCGTCGACGGCCTACCTCGGCAAGACGGAGGACAGCGTCGAGTTCGACACGACCAGC
TGCCGCCATGACGGCGACGCGGCGATGCCGGAGGAGATGGAGCAGATGGCGCTGCGCAAGTACGGCGGCGTGCCGCACTG
GGGGAAGAACCGGAACGTGGCGTTCGACGGCGCCATTGCCAAATTCCCCAAAGCCGGCGAGTTTATGAAGGTGAAGGACG
CGTACGATCCCGATGGGCTCTTCTCCAGTGAGTGGAGCGACGCCTACGCCGATGCATGATCGAACTCGATCGTCAGAACA
TGACACGTACGACGGCTTGTATGTACGTGTAGTGTGTGTGGCCATGCTATGCAGGCCGCGTGAATAATGTAGTAGTACTG
GCAGTTAAATCTGCACGAATGTACTGCTACATGACTGCAATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51655.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis