Browse Element(s) Details


OsAffx.17443.1.S1_at

Description tigr:9636.m04129
TID=OsAffx.17443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4078010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40720Os.51655.1.S1_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40720Os.51655.2.S1_x_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40730OsAffx.6096.1.S1_at11/118+25640800..25641639hypothetical protein
LOC_Os08g40740Os.9347.1.S1_at1/118+25645613..25646518Glycosyl hydrolases family 18 protein
LOC_Os08g40750OsAffx.29612.1.S1_at11/118+25648342..25652648hypothetical protein
LOC_Os08g40750Os.25139.1.A1_at5/118+25648342..25652648hypothetical protein
LOC_Os08g40750OsAffx.828.1.S1_x_at1/118+25648342..25652648hypothetical protein
LOC_Os08g40760Os.27691.2.S1_x_at2/118+25655075..25656004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40760Os.27691.1.S1_x_at1/118+25655075..25656004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40770Os.27691.1.S1_x_at4/118+25656258..25659518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40780OsAffx.17443.1.S1_at10/118+25661510..25663932hypothetical protein
LOC_Os08g40790Os.9471.1.S1_a_at11/118+25666295..25671192DNA repair ATPase, putative, expressed
LOC_Os08g40800NANA8+25675039..25681203retrotransposon protein, putative, unclassified
LOC_Os08g40810NANA8+25681831..25682766retrotransposon protein, putative, unclassified
LOC_Os08g40820Os.53388.2.S1_at11/118+25684918..25690623expressed protein
LOC_Os08g40820Os.53388.1.S1_x_at11/118+25684918..25690623expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17443.1.S1_at--991--9791Chr08:25663203..25663227 (25 bp)
TAACGTTTACTCTCAACCTTGCGGA
LOC_Os08g40780
OsAffx.17443.1.S1_at--403--6551Chr08:25663154..25663178 (25 bp)
GATTTTGTATCCGAGTTGCGCCAAT
LOC_Os08g40780
OsAffx.17443.1.S1_at--961--1231Chr08:25663141..25663165 (25 bp)
AGTTGCGCCAATACTCTGTTGAGAG
LOC_Os08g40780
OsAffx.17443.1.S1_at--227--6011Chr08:25663121..25663145 (25 bp)
GAGAGGGCACCATTTACTTGTAGAA
LOC_Os08g40780
OsAffx.17443.1.S1_at--806--10451Chr08:25663108..25663132 (25 bp)
TTACTTGTAGAAATTGCCCCACCAC
LOC_Os08g40780
OsAffx.17443.1.S1_at--465--2171NONE
ACACCCGTCGATGTCTTCAGAGGAA
NONE
OsAffx.17443.1.S1_at--970--8191Chr08:25662548..25662569 (22 bp)
GGAAGATATTGCTTTGGCCCCAATG
LOC_Os08g40780
OsAffx.17443.1.S1_at--346--9891Chr08:25662580..25662604 (25 bp)
TACTTTGGCTTTGGGTACTACGGTG
LOC_Os08g40780
OsAffx.17443.1.S1_at--890--131Chr08:25662548..25662572 (25 bp)
ATTAGATATTGCTTTGGCCCCAATG
LOC_Os08g40780
OsAffx.17443.1.S1_at--283--6131Chr08:25662204..25662224 (21 bp)
GAGTGGTTCATTCCTAATTGTTTCA
LOC_Os08g40780
OsAffx.17443.1.S1_at--682--6911Chr08:25662161..25662185 (25 bp)
GTAGGTTCATTTCTTAGTGTTTCAG
LOC_Os08g40780
Target Sequence 
TAACGTTTACTCTCAACCTTGCGGACGTGGACAAAGAACAACTTACACTGATTTTGTATCCGAGTTGCGCCAATACTCTG
TTGAGAGGGCACCATTTACTTGTAGAAATTGCCCCACCACACCCGTCGATGTCTTCAGAGGAAACAAAAATCGAAGCAAG
TTATCATAAATTGATTCCCAGTGGAAGATATTGCTTTGGCCCCAATGAGTGGTACTTTGGCTTTGGGTACTACGGTGATG
AACAATTAGATATTGCTTTGGCCCCAATGAGTGGTTCATTCCTAATTGTTTCAGGAATCATGTATTATTGTGTAGGTTCA
TTTCTTAGTGTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis