Browse Element(s) Details


Os.53388.1.S1_x_at

Description gb:AK105273.1
DB_XREF= gi:32990482
TID=Os.53388.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-H02, full insert sequence.
FL= gb:AK105273.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4082011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40780OsAffx.17443.1.S1_at10/118+25661510..25663932hypothetical protein
LOC_Os08g40790Os.9471.1.S1_a_at11/118+25666295..25671192DNA repair ATPase, putative, expressed
LOC_Os08g40800NANA8+25675039..25681203retrotransposon protein, putative, unclassified
LOC_Os08g40810NANA8+25681831..25682766retrotransposon protein, putative, unclassified
LOC_Os08g40820Os.53388.2.S1_at11/118+25684918..25690623expressed protein
LOC_Os08g40820Os.53388.1.S1_x_at11/118+25684918..25690623expressed protein
LOC_Os08g40830Os.52026.3.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.10417.1.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.52026.2.S1_at9/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40840OsAffx.17444.1.S1_at11/118+25712545..25715139Exo70 exocyst complex subunit family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53388.1.S1_x_at--314--4311Chr08:25689119..25689143 (25 bp)
CCTTCAATTTTTGCATCTGACCTCA
LOC_Os08g40820
Os.53388.1.S1_x_at--613--6091Chr08:25689158..25689182 (25 bp)
GAGTCTATCATGACTTTCCGTCTTT
LOC_Os08g40820
Os.53388.1.S1_x_at--838--5211Chr08:25689205..25689229 (25 bp)
GAATAGTGCCCTCATGAGTGTTCAT
LOC_Os08g40820
Os.53388.1.S1_x_at--132--3231Chr08:25689254..25689277 (24 bp)
CAAGTTCAATCCTCTCTTGATAAGA
LOC_Os08g40820
Os.53388.1.S1_x_at--124--371Chr08:25689916..25689940 (25 bp)
ATCAAGGTTGTGTCAAGGGTCCTAA
LOC_Os08g40820
Os.53388.1.S1_x_at--742--7791Chr08:25689933..25689957 (25 bp)
GGTCCTAAGGATGGCGAAGCTCAGC
LOC_Os08g40820
Os.53388.1.S1_x_at--410--8911Chr08:25689989..25690013 (25 bp)
TGAGCAAGCTGGATCTCTCCGACAA
LOC_Os08g40820
Os.53388.1.S1_x_at--784--8251Chr08:25690073..25690097 (25 bp)
GGCACCGCAAAATGTGGCATCTGCT
LOC_Os08g40820
Os.53388.1.S1_x_at--868--8271Chr08:25690088..25690112 (25 bp)
GGCATCTGCTACACTTTGAATACTT
LOC_Os08g40820
Os.53388.1.S1_x_at--876--8911Chr08:25690131..25690155 (25 bp)
TGAGCTGATACCACCCTATTATATG
LOC_Os08g40820
Os.53388.1.S1_x_at--602--9791Chr08:25690197..25690221 (25 bp)
TAAGAAGAGTTGCTGCTAGATCCCC
LOC_Os08g40820
Target Sequence 
CCTTCAATTTTTGCATCTGACCTCATCAAATTATTAGAGGAGTCTATCATGACTTTCCGTCTTTTCCTGAAAAAGGACAA
GAAAAAGAATAGTGCCCTCATGAGTGTTCATAGTCATACNGGANGCTCGATTCAACAAGTTCAATCCTCTCTTGATAAGA
ANGAAGTGAAAGNGAAGGAGCTATTCAAGAAGAANAAAGGNNNGNANNNNNANNNCNNGNCNNNNNNNATGGNNGNANNN
NNNNNNNNTTTTGCCTTAATCGACATCAAGGTTGTGTCAAGGGTCCTAAGGATGGCGAAGCTCAGCAAGGAGCAGCTCCT
GTGGTGTGAGGAGAAGATGAGCAAGCTGGATCTCTCCGACAACAAGCTGCGGCGCGATGGATCCCCAATCCTGTTCCCCT
GTTGACCCATCGAGTGCCTGAGGCACCGCAAAATGTGGCATCTGCTACACTTTGAATACTTTATAGCTTAGCTGCTGTAT
GAGCTGATACCACCCTATTATATGTAAATGCCTTTAGGTTTAAATGCTCATACTAAAACGATACCTAAGAAGAGTTGCTG
CTAGATCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53388.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis