Browse Element(s) Details


Os.9471.1.S1_a_at

Description gb:AK070323.1
DB_XREF= gi:32980347
TID=Os.9471.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23522 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052N10, full insert sequence.
FL= gb:AK070323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4079011/11DNA repair ATPase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40730OsAffx.6096.1.S1_at11/118+25640800..25641639hypothetical protein
LOC_Os08g40740Os.9347.1.S1_at1/118+25645613..25646518Glycosyl hydrolases family 18 protein
LOC_Os08g40750OsAffx.29612.1.S1_at11/118+25648342..25652648hypothetical protein
LOC_Os08g40750Os.25139.1.A1_at5/118+25648342..25652648hypothetical protein
LOC_Os08g40750OsAffx.828.1.S1_x_at1/118+25648342..25652648hypothetical protein
LOC_Os08g40760Os.27691.2.S1_x_at2/118+25655075..25656004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40760Os.27691.1.S1_x_at1/118+25655075..25656004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40770Os.27691.1.S1_x_at4/118+25656258..25659518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40780OsAffx.17443.1.S1_at10/118+25661510..25663932hypothetical protein
LOC_Os08g40790Os.9471.1.S1_a_at11/118+25666295..25671192DNA repair ATPase, putative, expressed
LOC_Os08g40800NANA8+25675039..25681203retrotransposon protein, putative, unclassified
LOC_Os08g40810NANA8+25681831..25682766retrotransposon protein, putative, unclassified
LOC_Os08g40820Os.53388.2.S1_at11/118+25684918..25690623expressed protein
LOC_Os08g40820Os.53388.1.S1_x_at11/118+25684918..25690623expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9471.1.S1_a_at--365--1731Chr08:25667167..25667191 (25 bp)
ACCATCTTAGATTACCTACACCAAC
LOC_Os08g40790
Os.9471.1.S1_a_at--552--4711Chr08:25667015..25667039 (25 bp)
GCTGGCTATCCCTGTCTATATTATA
LOC_Os08g40790
Os.9471.1.S1_a_at--27--5371Chr08:25666851..25666875 (25 bp)
GAAGAGACCACCTCATGGCGGTAAC
LOC_Os08g40790
Os.9471.1.S1_a_at--1031--271Chr08:25666819..25666843 (25 bp)
ATAGGAGACACAAGCGCCGGCATGC
LOC_Os08g40790
Os.9471.1.S1_a_at--33--7671Chr08:25666776..25666800 (25 bp)
GGGATACATTGGGACTCACCCGCTA
LOC_Os08g40790
Os.9471.1.S1_a_at--421--6891Chr08:25666536..25666560 (25 bp)
GTATACCACCATAGTTTTCTTCTCT
LOC_Os08g40790
Os.9471.1.S1_a_at--89--4211Chr08:25666490..25666514 (25 bp)
CCCCGGTGTATCTTTGCTATGAACT
LOC_Os08g40790
Os.9471.1.S1_a_at--1093--3691Chr08:25666474..25666498 (25 bp)
CTATGAACTTGTGTCGCAGCGGCCT
LOC_Os08g40790
Os.9471.1.S1_a_at--922--4111Chr08:25666460..25666484 (25 bp)
CGCAGCGGCCTTTTATATCTGCATT
LOC_Os08g40790
Os.9471.1.S1_a_at--175--3851Chr08:25666411..25666435 (25 bp)
CTGCATTTCAGCGTTTGTTTTGTTG
LOC_Os08g40790
Os.9471.1.S1_a_at--304--3031Chr08:25666351..25666375 (25 bp)
AATGCGTGCATGATATCTGGTTTTT
LOC_Os08g40790
Target Sequence 
ACCATCTTAGATTACCTACACCAACATGAGGTATCCAAATCACTTGCGACGAAGGAGTTGGTTTGGTTCCTGGCTTCTGC
TTTGCTGGCTATCCCTGTCTATATTATATACAGGCTTCTAATGGAAGCATTCTGCAGTAAGAAGCCGAAGAGACCACCTC
ATGGCGGTAACCACGGCCATAGGAGACACAAGCGCCGGCATGCTGATAAGTAGGCACTTGTGGGATACATTGGGACTCAC
CCGCTATTTAGGGTTGCAGATCTTGGAGCAGAATCAGCAATGGTGGAAGGATATATTTGGGTCATGGGCAACCCTGAAAA
GTGCTGTATACCACCATAGTTTTCTTCTCTTTTTTAGTTTTCTTATTTCTCCCCCGGTGTATCTTTGCTATGAACTTGTG
TCGCAGCGGCCTTTTATATCTGCATTTTGCTGAGGTTTACGGGGAAACCTCTGCATTTCAGCGTTTGTTTTGTTGGTATT
TTATTTGTTATTGTTTCCTGTAACTTTGTTAATGCGTGCATGATATCTGGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9471.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis