Browse Element(s) Details


Os.9347.1.S1_at

Description gb:AB027417.1
DB_XREF= gi:4884497
TID=Os.9347.1
CNT=45
FEA=FLmRNA
TIER=FL+Stack
STK=21
UG=Os.9347 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C3540.
PROD=class III chitinase homologue (OsChib3H-a)
FL= gb:AB027415.1 gb:AB027420.1 gb:AB027419.1 gb:AB027418.1 gb:AK102862.1 gb:AB027417.1 gb:D55712.1 gb:AK063939.1 gb:AB027416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4758011/11Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os08g407401/11Glycosyl hydrolases family 18 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47520Os.25636.1.S1_at11/1111+28172142..28173317Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47530Os.169.1.S1_at11/1111+28175114..28176274Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47550Os.9964.1.S1_at11/1111+28177983..28179140Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.50837.1.S1_at11/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.49578.1.S1_x_at1/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.49578.1.S1_x_at11/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.50837.1.S1_at2/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47580Os.9347.1.S1_at11/1111+28195854..28197103Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47590Os.51920.1.S1_at11/1111+28197991..28199150Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47600Os.32890.1.S1_at11/1111+28200834..28202000Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47610Os.53617.1.S1_at11/1111+28202408..28203600Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47620OsAffx.7443.1.S1_at11/1111+28204625..28205116Zinc finger, C2H2 type family protein
LOC_Os11g47630Os.51307.1.S1_at11/1111+28208091..28208934Zinc finger, C2H2 type family protein, expressed
LOC_Os11g47640OsAffx.19426.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640Os.52655.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640OsAffx.14237.1.S1_at1/1111+28211601..28215464expressed protein
LOC_Os11g47650Os.9833.1.S1_at11/1111+28216432..28219984expressed protein
LOC_Os11g47650Os.54085.1.S1_at3/1111+28216432..28219984expressed protein
LOC_Os11g47660OsAffx.19427.1.S1_at11/1111+28221817..28222928hypothetical protein
LOC_Os11g47660Os.24409.1.S1_at1/1111+28221817..28222928hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9347.1.S1_at--493--1411Chr11:28196730..28196754 (25 bp)
AGAACGACAACGTGTTCATCAAGCA
LOC_Os11g47580
Os.9347.1.S1_at--196--3571Chr11:28196746..28196770 (25 bp)
CATCAAGCAGCTCTACTACGATCTG
LOC_Os11g47580
Os.9347.1.S1_at--157--9951Chr11:28196762..28196786 (25 bp)
TACGATCTGCTTCCCAATGTGCAGA
LOC_Os11g47580
Os.9347.1.S1_at--144--2951Chr11:28196786..28196810 (25 bp)
AAGGCGAAGAACTATGGCGGAATCA
LOC_Os11g47580
Os.9347.1.S1_at--623--4691Chr11:28196802..28196826 (25 bp)
GCGGAATCATGCTCTGGGACAGGTT
LOC_Os11g47580
Os.9347.1.S1_at--1013--6711Chr11:28196824..28196848 (25 bp)
GTTCTACGACAAGCAGACCGGTTAC
LOC_Os11g47580
Os.9347.1.S1_at--1038--8212Chr11:28196849..28196873 (25 bp)
GGCAAAACCGTCAAGTACTGGGCTT
LOC_Os11g47580
Os.9347.1.S1_at--158--2031Chr11:28196887..28196911 (25 bp)
ACTACTACTATTTACTGCTACTATG
LOC_Os11g47580
Os.9347.1.S1_at--1083--4831Chr11:28196903..28196927 (25 bp)
GCTACTATGCGTTAATTTGTGCGTG
LOC_Os11g47580
Os.9347.1.S1_at--153--6251Chr11:28197007..28197031 (25 bp)
GATGGAGATCTCGAGTTGTTTGTTT
LOC_Os11g47580
Os.9347.1.S1_at--143--6872Chr11:28197024..28197048 (25 bp)
GTTTGTTTGTTGGTCATCAATCGAA
LOC_Os11g47580
Target Sequence 
AGAACGACAACGTGTTCATCAAGCAGCTCTACTACGATCTGCTTCCCAATGTGCAGAAGGCGAAGAACTATGGCGGAATC
ATGCTCTGGGACAGGTTCTACGACAAGCAGACCGGTTACGGCAAAACCGTCAAGTACTGGGCTTAATTAATTAACCTACT
ACTACTATTTACTGCTACTATGCGTTAATTTGTGCGTGTGTGTTTGAGAATAAAATATGTTGGTGTGTGTTGGTTTTTTT
ATGTAGGTATATGAATAAAACGAGATCCATATGTAACGATGGAGATCTCGAGTTGTTTGTTTGTTGGTCATCAATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis