Browse Element(s) Details


Os.24409.1.S1_at

Description gb:AK110939.1
DB_XREF= gi:32996148
TID=Os.24409.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-G08, full insert sequence.
FL= gb:AK110939.1 gb:AK102388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2815011/11F-box domain containing protein, expressed
LOC_Os11g476601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28130OsAffx.25367.1.S1_at1/111+16074173..16080352retrotransposon, putative, centromere-specific
LOC_Os01g28140Os.14919.1.S1_at3/111+16096279..16102199transposon protein, putative, Mutator sub-class
LOC_Os01g28140OsAffx.29313.1.S1_at1/111+16096279..16102199transposon protein, putative, Mutator sub-class
LOC_Os01g28150Os.24409.1.S1_at11/111+16104243..16107862F-box domain containing protein, expressed
LOC_Os01g28150Os.24409.2.S1_x_at8/111+16104243..16107862F-box domain containing protein, expressed
LOC_Os01g28160NANA1+16108797..16109881hypothetical protein
LOC_Os01g28170NANA1+16113418..16117770transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g28184Os.47463.1.S1_x_at5/111+16119160..16123952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28184Os.14491.2.S1_x_at3/111+16119160..16123952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28200Os.40626.2.S1_x_at11/111+16125868..16128611hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24409.1.S1_at--809--7131Chr01:16106851..16106875 (25 bp)
GTCTTGGTATCTTATTCCTATGGCA
LOC_Os01g28150
Os.24409.1.S1_at--750--10052Chr11:28222282..28222342 (25 bp)
TAGTATGCTTTGCTGTTGCCCTTGA
LOC_Os11g47660
Os.24409.1.S1_at--1046--2491Chr01:16106997..16107021 (25 bp)
AACATGTTCCATCTACTTGTACTGA
LOC_Os01g28150
Os.24409.1.S1_at--1083--10331Chr01:16107534..16107558 (25 bp)
TTTACCCAACCTTACACACAATGTT
LOC_Os01g28150
Os.24409.1.S1_at--1130--7411Chr01:16107584..16107608 (25 bp)
GTGTTTTGGTCCTTTCATCAGCAAC
LOC_Os01g28150
Os.24409.1.S1_at--358--5511Chr01:16107632..16107656 (25 bp)
GAACAAAATGCTACGCCACTGCTTA
LOC_Os01g28150
Os.24409.1.S1_at--92--4411Chr01:16107646..16107670 (25 bp)
GCCACTGCTTACATAGGTGTCGGGA
LOC_Os01g28150
Os.24409.1.S1_at--1152--5171Chr01:16107673..16107697 (25 bp)
GCAAGTGCGGCGACTTTAACACAGT
LOC_Os01g28150
Os.24409.1.S1_at--323--3311Chr01:16107692..16107716 (25 bp)
CACAGTATTTTCTAGCTTCCGATGA
LOC_Os01g28150
Os.24409.1.S1_at--662--3291Chr01:16107727..16107751 (25 bp)
CAAATCCATGTTTTACCCGGAGACA
LOC_Os01g28150
Os.24409.1.S1_at--507--3711Chr01:16107756..16107780 (25 bp)
CTAGTGCTTGCGGTATGTTTGGTAT
LOC_Os01g28150
Target Sequence 
GTCTTGGTATCTTATTCCTATGGCAGTGCNAAGTGCCAACNACTTAGCCCCTCCTGTACTCTNTGATGATGCACATGAGC
TTTTGGAGATCAGATTGGAAATCTGGNTTAGTATGCTTTGCTGTTGCCCTTGATCTGTCAAGCATCAACATGTTCCATCT
ACTTGTACTGATTTATAGAACTTTGCTGGAGGTAAGGAGGGAACAGGGGTGTTTACCCAACCTTACACACAATGTTGACA
GAGCAGGTCGGGTGGCCGCTGGTGTTTTGGTCCTTTCATCAGCAACAAATGTAAAAGTTTGCCAATCGCGAACAAAATGC
TACGCCACTGCTTACATAGGTGTCGGGATTGCAAGTGCGGCGACTTTAACACAGTATTTTCTAGCTTCCGATGATATTTT
ACTACAAATCCATGTTTTACCCGGAGACAAATTCTAGTGCTTGCGGTATGTTTGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis