Browse Element(s) Details


Os.24409.2.S1_x_at

Description gb:AK064420.1
DB_XREF= gi:32974438
TID=Os.24409.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-B09, full insert sequence.
FL= gb:AK064420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g281508/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28130OsAffx.25367.1.S1_at1/111+16074173..16080352retrotransposon, putative, centromere-specific
LOC_Os01g28140Os.14919.1.S1_at3/111+16096279..16102199transposon protein, putative, Mutator sub-class
LOC_Os01g28140OsAffx.29313.1.S1_at1/111+16096279..16102199transposon protein, putative, Mutator sub-class
LOC_Os01g28150Os.24409.1.S1_at11/111+16104243..16107862F-box domain containing protein, expressed
LOC_Os01g28150Os.24409.2.S1_x_at8/111+16104243..16107862F-box domain containing protein, expressed
LOC_Os01g28160NANA1+16108797..16109881hypothetical protein
LOC_Os01g28170NANA1+16113418..16117770transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g28184Os.47463.1.S1_x_at5/111+16119160..16123952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28184Os.14491.2.S1_x_at3/111+16119160..16123952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28200Os.40626.2.S1_x_at11/111+16125868..16128611hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24409.2.S1_x_at--516--6551Chr01:16105983..16106007 (25 bp)
GATTATATTGCTATGTTGGCCTTCA
LOC_Os01g28150
Os.24409.2.S1_x_at--406--10511NONE
TTCAATCCATCATCGTTCTGTCATT
NONE
Os.24409.2.S1_x_at--318--8891Chr01:16106108..16106132 (25 bp)
TGAGGATTTCACTTGGATTGCCGAT
LOC_Os01g28150
Os.24409.2.S1_x_at--790--6531Chr01:16106159..16106183 (25 bp)
GATTTCAATGCCACATGTCCTACTT
LOC_Os01g28150
Os.24409.2.S1_x_at--398--771Chr01:16106173..16106197 (25 bp)
ATGTCCTACTTCATGGTGTTCTGTA
LOC_Os01g28150
Os.24409.2.S1_x_at--667--6471Chr01:16106258..16106282 (25 bp)
GATACATCGTTGGACCTTTGAGCTT
LOC_Os01g28150
Os.24409.2.S1_x_at--835--3031Chr01:16106332..16106356 (25 bp)
AATCGTCCGGCATCTTACACTATAT
LOC_Os01g28150
Os.24409.2.S1_x_at--602--851Chr01:16106371..16106395 (25 bp)
ATGGCTGCTGGCTTAATGTCTGGAG
LOC_Os01g28150
Os.24409.2.S1_x_at--384--5571Chr01:16106400..16106424 (25 bp)
GAAAGTCGTCATCAACAGTGGAGCA
LOC_Os01g28150
Os.24409.2.S1_x_at--1049--1831NONE
ACGCACTCTCTTAGCTAGCCAAGAT
NONE
Os.24409.2.S1_x_at--758--7331Chr05:21326072..21326096 (25 bp)
GTGCATGGCAGTGCCACTGTTGTAT
NONE
Target Sequence 
GATTATATTGCTATGTTGGCCTTCAATCCATCATCGTTCTGTCATTTTTTTGTCTTTAACTTCCAGAAGAGGGGATCCCC
ACACTCAGGGGTTTTTGTCATCACTGAAGTTGAGATATTTTCCTCTGAGGATTTCACTTGGATTGCCGATGATGCATTTG
AAACTGAAATTATGATGATTTCAATGCCACATGTCCTACTTCATGGTGTTCTGTATCTACGGACTGTAGAACATAGTGTT
TTTGCGATTGAAACACCACACATGTATAAACCATGGATACATCGTTGGACCTTTGAGCTTCCTGGGGATTCATGTCCCAT
GAACAACTATATATGGGGCTGCCTCGGCGAATCGTCCGGCATCTTACACTATATGCAGCCAAACTATGATGGCTGCTGGC
TTAATGTCTGGAGGCTTGAAAGTCGTCATCAACAGTGGAGCATGACGCACTCTCTTAGCTAGCCAAGATGATGATATGGT
GGTGTTGTGTGTTCAAAATGCATCCATGCAAGAAACCAAAGAAAGGTGCATGGCAGTGCCACTGTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24409.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis