Browse Element(s) Details


Os.40626.2.S1_x_at

Description gb:NM_193898.1
DB_XREF= gi:34914879
GEN=B1096D03.1
TID=Os.40626.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1096D03.1 (B1096D03.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1096D03.1 (B1096D03.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2820011/11hAT family dimerisation domain containing protein
LOC_Os12g3525010/11hAT family dimerisation domain containing protein
LOC_Os12g352209/11hAT family dimerisation domain containing protein
LOC_Os05g167309/11hAT family dimerisation domain containing protein
LOC_Os05g143209/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g351208/11hAT family dimerisation domain containing protein
LOC_Os10g402407/11transposase, putative, expressed
LOC_Os01g524306/11hAT family dimerisation domain containing protein
LOC_Os11g305905/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28140Os.14919.1.S1_at3/111+16096279..16102199transposon protein, putative, Mutator sub-class
LOC_Os01g28140OsAffx.29313.1.S1_at1/111+16096279..16102199transposon protein, putative, Mutator sub-class
LOC_Os01g28150Os.24409.1.S1_at11/111+16104243..16107862F-box domain containing protein, expressed
LOC_Os01g28150Os.24409.2.S1_x_at8/111+16104243..16107862F-box domain containing protein, expressed
LOC_Os01g28160NANA1+16108797..16109881hypothetical protein
LOC_Os01g28170NANA1+16113418..16117770transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g28184Os.47463.1.S1_x_at5/111+16119160..16123952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28184Os.14491.2.S1_x_at3/111+16119160..16123952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28200Os.40626.2.S1_x_at11/111+16125868..16128611hAT family dimerisation domain containing protein
LOC_Os01g28220OsAffx.11239.1.S1_at8/111+16134499..16134798hypothetical protein
LOC_Os01g28230OsAffx.11240.1.S1_at11/111+16141223..16142017hypothetical protein
LOC_Os01g28244OsAffx.655.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.8338.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.1197.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40626.2.S1_x_at--627--1057Chr12:21389682..21389706 (25 bp)
AGGTGTGATTTCCTGTATTGACAAG
LOC_Os12g35250
Os.40626.2.S1_x_at--1011--399Chr12:21389765..21389789 (25 bp)
ATCAGCATGGGAGTTTTGGACACGA
LOC_Os12g35250
Os.40626.2.S1_x_at--854--10819Chr12:21389780..21389804 (25 bp)
TTGGACACGAAATTGCCGTAAGGCA
LOC_Os12g35250
Os.40626.2.S1_x_at--309--179Chr12:21389819..21389919 (25 bp)
ATTTCAATCCAGCAAAATGGTGGCT
LOC_Os12g35250
Os.40626.2.S1_x_at--34--8171Chr01:16128093..16128117 (25 bp)
GGAACAAGCACACCAAATCTTAGGA
LOC_Os01g28200
Os.40626.2.S1_x_at--321--1772Chr12:21389978..21390002 (25 bp)
ACCTGCAGCTCCTTAGCTTGTGAGA
LOC_Os12g35250
Os.40626.2.S1_x_at--315--1458Chr12:21390153..21390177 (25 bp)
AGAAGCGCAACAGGCTACTTCATGA
LOC_Os12g35250
Os.40626.2.S1_x_at--889--596Chr12:21390182..21390206 (25 bp)
ATGCGAGATCTGGTGTTTGTTAAAT
LOC_Os12g35250
Os.40626.2.S1_x_at--159--138Chr12:21390298..21390322 (25 bp)
ATTCATTACTGGTGTTGTGCCTTCA
LOC_Os12g35250
Os.40626.2.S1_x_at--563--8617Chr12:21390307..21390331 (25 bp)
TGGTGTTGTGCCTTCATCAAGTGAA
LOC_Os12g35250
Os.40626.2.S1_x_at--599--2338Chr12:21390350..21390374 (25 bp)
AAAGAGTCACAGCAGCACACAACAC
LOC_Os12g35250
Target Sequence 
AGGTGTGATTTCCTGTATTGACAAGTTGGTTGATGATGAAGATATCCAAGACAAAATAATTGAAGAACTCAACTTGTATC
AAGATCAGCATGGGAGTTTTGGACACGAAATTGCCGTAAGGCAGCGAAAGAACAAAAATTTCAATCCAGCAAAATGGTGG
CTGAACCATGGAACAAGCACACCAAATCTTAGGAAGTTGGCTGCAAGAATTTTGAGTTTGACCTGCAGCTCCTTAGCTTG
TGAGAGGAACTGGTCAGTTTTTGAACAGGTTGATACAAAGAAGCGCAACAGGCTACTTCATGAAAGGATGCGAGATCTGG
TGTTTGTTAAATTTAACTCCAAGTTAAGAAATAAGAGAGAGAACAAGGGTAGAGATCCTATAGAGAAGGAAGTGGATGAT
GTTGTGGCAGATGGTGACAATGAATTCATTACTGGTGTTGTGCCTTCATCAAGTGAAATGGATCAACAATGTGCAAAAGA
GTCACAGCAGCACACAACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40626.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis