Browse Element(s) Details


OsAffx.11239.1.S1_at

Description gb:NM_193900.1
DB_XREF= gi:34914883
GEN=B1096D03.3
TID=OsAffx.11239.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1096D03.3 (B1096D03.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g282208/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28160NANA1+16108797..16109881hypothetical protein
LOC_Os01g28170NANA1+16113418..16117770transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g28184Os.47463.1.S1_x_at5/111+16119160..16123952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28184Os.14491.2.S1_x_at3/111+16119160..16123952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28200Os.40626.2.S1_x_at11/111+16125868..16128611hAT family dimerisation domain containing protein
LOC_Os01g28220OsAffx.11239.1.S1_at8/111+16134499..16134798hypothetical protein
LOC_Os01g28230OsAffx.11240.1.S1_at11/111+16141223..16142017hypothetical protein
LOC_Os01g28244OsAffx.655.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.8338.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.1197.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11239.1.S1_at--175--9011Chr01:16134215..16134235 (21 bp)
TGAAGGATCTCCGTCAGCGAGCAGA
NONE
OsAffx.11239.1.S1_at--1135--6611Chr01:16134382..16134406 (25 bp)
GTTGTCGTTCTTGAGTCAGCAAAGG
NONE
OsAffx.11239.1.S1_at--866--991Chr01:16134496..16134520 (25 bp)
AGGATGGTGTCTCTCCTGATCGATC
NONE
OsAffx.11239.1.S1_at--707--8851Chr01:16134512..16134536 (25 bp)
TGATCGATCTGGCTGCCACAGGCGA
LOC_Os01g28220
OsAffx.11239.1.S1_at--1056--2591Chr01:16134562..16134586 (25 bp)
AACGCGTCCTGGGAGACAGCGCTGC
LOC_Os01g28220
OsAffx.11239.1.S1_at--1138--5651Chr01:16134613..16134637 (25 bp)
GACATCGTTGTCCAGCTAATGGCAG
LOC_Os01g28220
OsAffx.11239.1.S1_at--324--1011Chr01:16134638..16134662 (25 bp)
AGGATTGCGAGCTTGCAGGTTTCCC
LOC_Os01g28220
OsAffx.11239.1.S1_at--870--1011Chr01:16134654..16134678 (25 bp)
AGGTTTCCCCAGAGATGGCGGCATA
LOC_Os01g28220
OsAffx.11239.1.S1_at--945--4491Chr01:16134681..16134705 (25 bp)
GCCGTTATACCTTGCTGTTTTGCTA
LOC_Os01g28220
OsAffx.11239.1.S1_at--641--3171Chr01:16134711..16134735 (25 bp)
AATTGATATCGCACGGTCATTGTAT
LOC_Os01g28220
OsAffx.11239.1.S1_at--191--5871Chr01:16134741..16134765 (25 bp)
GAGCCATGGGAATCTCTCATATTCT
LOC_Os01g28220
Target Sequence 
TGAAGGATCTCCGTCAGCGAGCAGACGAAGGGCCAGCACCATCCACTCTCCTGGAGGGAGTCACCTCCGTCGAGGGGAAC
TCTGCGCTCCATGTGGTCGCGTCACGCGGCGGCAGCGACGGCGAGTTGTTGTCGTTCTTGAGTCAGCAAAGGTGATCCAC
GACAGGGCGAGGCATCTCCTGCACGCGCGCAACAAGAAAGGCGACACGCCGTTACACTACGGCGCAAGGGCGGGGGGAAT
CAGGATGGTGTCTCTCCTGATCGATCTGGCTGCCACAGGCGAGCGGTGCCAGCTGCTGCGCGCGACGAACGCGTCCTGGG
AGACAGCGCTGCACGAGGTAGTCCGTGCTGGGAGCAAGGACATCGTTGTCCAGCTAATGGCAGAGGATTGCGAGCTTGCA
GGTTTCCCCAGAGATGGCGGCATATCGCCGTTATACCTTGCTGTTTTGCTAGATGAAATTGATATCGCACGGTCATTGTA
TGTGATGAGCCATGGGAATCTCTCATATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis