Browse Element(s) Details


Os.49578.1.S1_x_at

Description gb:AU108098
DB_XREF= gi:10423478
DB_XREF=AU108098
CLONE=C11725
TID=Os.49578.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.49578 (NCBI UniGene Cluster)
UG_TITLE=MRNA for class III chitinase homologue (OsChib3H-g), partial cds, clone:C63579
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4757011/11Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g475601/11Xylanase inhibitor protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47500Os.172.1.S1_a_at11/1111+28164543..28166059Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47510Os.4670.1.S1_at11/1111+28169475..28170818Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47520Os.25636.1.S1_at11/1111+28172142..28173317Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47530Os.169.1.S1_at11/1111+28175114..28176274Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47550Os.9964.1.S1_at11/1111+28177983..28179140Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.50837.1.S1_at11/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.49578.1.S1_x_at1/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.49578.1.S1_x_at11/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.50837.1.S1_at2/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47580Os.9347.1.S1_at11/1111+28195854..28197103Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47590Os.51920.1.S1_at11/1111+28197991..28199150Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47600Os.32890.1.S1_at11/1111+28200834..28202000Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47610Os.53617.1.S1_at11/1111+28202408..28203600Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47620OsAffx.7443.1.S1_at11/1111+28204625..28205116Zinc finger, C2H2 type family protein
LOC_Os11g47630Os.51307.1.S1_at11/1111+28208091..28208934Zinc finger, C2H2 type family protein, expressed
LOC_Os11g47640OsAffx.19426.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640Os.52655.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640OsAffx.14237.1.S1_at1/1111+28211601..28215464expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49578.1.S1_x_at--812--9111Chr11:28190127..28190151 (25 bp)
TGCTGCTCGTCGTCGTGTCCTGCCT
LOC_Os11g47570
Os.49578.1.S1_x_at--30--1931Chr11:28190165..28190189 (25 bp)
ACGGCCGACTGGTACGGCCCGCTCG
LOC_Os11g47570
Os.49578.1.S1_x_at--1002--9911Chr11:28190195..28190219 (25 bp)
TACTGGGGTCGCCACAAGGACTACG
LOC_Os11g47570
Os.49578.1.S1_x_at--992--10571Chr11:28190276..28190300 (25 bp)
TTCTACAGCGTCTTCGGCTACGTCA
LOC_Os11g47570
Os.49578.1.S1_x_at--201--4651Chr11:28190283..28190307 (25 bp)
GCGTCTTCGGCTACGTCAAGGGCAG
LOC_Os11g47570
Os.49578.1.S1_x_at--290--7151Chr11:28190285..28190309 (25 bp)
GTCTTCGGCTACGTCAAGGGCAGGT
LOC_Os11g47570
Os.49578.1.S1_x_at--628--9571Chr11:28190286..28190310 (25 bp)
TCTTCGGCTACGTCAAGGGCAGGTA
LOC_Os11g47570
Os.49578.1.S1_x_at--886--3611Chr11:28190287..28190311 (25 bp)
CTTCGGCTACGTCAAGGGCAGGTAC
LOC_Os11g47570
Os.49578.1.S1_x_at--692--10611Chr11:28190288..28190312 (25 bp)
TTCGGCTACGTCAAGGGCAGGTACG
LOC_Os11g47570
Os.49578.1.S1_x_at--1015--1492Chr11:28190361..28190385 (25 bp)
AGCACTGCCAGTCCAAGGGCGTCCA
LOC_Os11g47570
Os.49578.1.S1_x_at--344--7571Chr11:28190410..28190434 (25 bp)
GGGCGGCGGGTACTCGCTCCCGTCA
LOC_Os11g47570
Target Sequence 
TGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGNNACGGCCGACTGGTACGGCCCGCTCGCCGTCTACTGGGGTCGC
CACAAGGACTACGANGGCTCCCTGAGAGAGGCCTGCNACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGT
CTTCGGCTACGTCAAGGGCAGGTACGGNCTCGACATCTCCGGCCACCCGGTCGCNGCCGTCGGCNCCGACATCAAGCACT
GCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49578.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis