Browse Element(s) Details


OsAffx.14237.1.S1_at

Description tigr:9632.m04025
TID=OsAffx.14237.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g625403/11hypothetical protein
LOC_Os11g476401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62510OsAffx.9554.1.S1_at11/111+36515551..36518530WRKY DNA binding domain containing protein
LOC_Os01g62520Os.54691.1.S1_x_at2/111+36534712..36537496Zinc knuckle family protein
LOC_Os01g62530OsAffx.11698.1.S1_at11/111+36539139..36540074hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_s_at11/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_at10/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.20192.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.14237.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62550OsAffx.2391.1.S1_at7/111+36543644..36545167hypothetical protein
LOC_Os01g62560OsAffx.21746.1.S1_at11/111+36546114..36547259expressed protein
LOC_Os01g62570NANA1+36549197..36555431GTP-binding protein, putative
LOC_Os01g62584OsAffx.28855.2.S1_at11/111+36557331..36560405expressed protein
LOC_Os01g62584OsAffx.28855.3.S1_x_at3/111+36557331..36560405expressed protein
LOC_Os01g62600OsAffx.21744.2.S1_x_at11/111+36563691..36565915laccase, putative
LOC_Os01g62600Os.46813.2.S1_x_at1/111+36563691..36565915laccase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14237.1.S1_at--157--6051Chr04:24750885..24750909 (25 bp)
GAGATTTTGGAGAACAACTTAGGCA
NONE
OsAffx.14237.1.S1_at--244--8551Chr04:24750892..24750916 (25 bp)
TGGAGAACAACTTAGGCATACGCTT
NONE
OsAffx.14237.1.S1_at--508--10092Chr04:24750904..24750928 (25 bp)
TAGGCATACGCTTGCCGACCTTTTA
NONE
OsAffx.14237.1.S1_at--752--312Chr04:24750909..24750933 (25 bp)
ATACGCTTGCCGACCTTTTACTGGA
NONE
OsAffx.14237.1.S1_at--504--4912Chr04:24750913..24750937 (25 bp)
GCTTGCCGACCTTTTACTGGACATC
NONE
OsAffx.14237.1.S1_at--1025--10331Chr04:24750925..24750949 (25 bp)
TTTACTGGACATCACAATGGCCGGA
NONE
OsAffx.14237.1.S1_at--190--8531Chr04:24750930..24750954 (25 bp)
TGGACATCACAATGGCCGGAAGAAC
NONE
OsAffx.14237.1.S1_at--1110--3271Chr04:24750937..24750961 (25 bp)
CACAATGGCCGGAAGAACCCGACGT
NONE
OsAffx.14237.1.S1_at--1112--5551Chr04:24750975..24750999 (25 bp)
GAAAGCAATGGTAGAGCGGTGGCCG
NONE
OsAffx.14237.1.S1_at--1014--3772Chr11:28211723..28211742 (20 bp)
CTCGGCGACGAGGTGCAGGTTGCGG
LOC_Os11g47640
OsAffx.14237.1.S1_at--1139--6131Chr04:24751110..24751134 (25 bp)
GAGGTGCAGGTTGCGGCTGTACCCG
NONE
Target Sequence 
GAGATTTTGGAGAACAACTTAGGCATACGCTTGCCGACCTTTTACTGGACATCACAATGGCCGGAAGAACCCGACGTCCC
CACATGCGAGGAAAGCAATGGTAGAGCGGTGGCCGGTGGACGAGGGCAGGAGGAGGCACTGCCGCTTCTTGCCGCCGCCG
GCTGCGGCGCAGGGCGTGGAGAAGGCGACCGCGGAGTCCGCGCGCTCGATGCGGAGCTCGGCGACGAGGTGCAGGTTGCG
GCTGTACCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis