Browse Element(s) Details


OsAffx.21744.2.S1_x_at

Description tigr:9629.m06183
TID=OsAffx.21744.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Multicopper oxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6260011/11laccase, putative
LOC_Os03g166101/11laccase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62530OsAffx.11698.1.S1_at11/111+36539139..36540074hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_s_at11/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_at10/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.20192.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.14237.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62550OsAffx.2391.1.S1_at7/111+36543644..36545167hypothetical protein
LOC_Os01g62560OsAffx.21746.1.S1_at11/111+36546114..36547259expressed protein
LOC_Os01g62570NANA1+36549197..36555431GTP-binding protein, putative
LOC_Os01g62584OsAffx.28855.2.S1_at11/111+36557331..36560405expressed protein
LOC_Os01g62584OsAffx.28855.3.S1_x_at3/111+36557331..36560405expressed protein
LOC_Os01g62600OsAffx.21744.2.S1_x_at11/111+36563691..36565915laccase, putative
LOC_Os01g62600Os.46813.2.S1_x_at1/111+36563691..36565915laccase, putative
LOC_Os01g62610OsAffx.11701.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610OsAffx.11701.1.S1_s_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610Os.54469.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62620Os.6108.1.S1_at11/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62620Os.6108.2.S1_x_at9/111+36584284..36588593DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21744.2.S1_x_at--1044--2511Chr01:36565106..36565130 (25 bp)
AACTTCTCGAGCAAGTTCCGCAGCC
LOC_Os01g62600
OsAffx.21744.2.S1_x_at--910--2632Chr01:36565223..36565247 (25 bp)
AACCAGACGTGCCAGGGCCCGAACG
LOC_Os01g62600
OsAffx.21744.2.S1_x_at--657--1231Chr01:36565254..36565278 (25 bp)
AGTTCGCCGCGTCCATCAACAACAA
LOC_Os01g62600
OsAffx.21744.2.S1_x_at--1150--9311Chr01:36565443..36565467 (25 bp)
TCGCGTTCAACACGTCGGTGGAGCT
LOC_Os01g62600
OsAffx.21744.2.S1_x_at--345--3631Chr01:36565510..36565534 (25 bp)
CTTGCACATGCACGGCTTCAACTTC
LOC_Os01g62600
OsAffx.21744.2.S1_x_at--589--9431Chr01:36565554..36565578 (25 bp)
TCGGCAACTACGACCCCGTGAACGA
LOC_Os01g62600
OsAffx.21744.2.S1_x_at--1065--6251Chr01:36565641..36565665 (25 bp)
GATGGGTCGCCGTTCGGTTCCTCGC
LOC_Os01g62600
OsAffx.21744.2.S1_x_at--1020--7711Chr01:36565785..36565809 (25 bp)
GGGTGTGGCTCATGCACTGTCACTT
LOC_Os01g62600
OsAffx.21744.2.S1_x_at--58--1971Chr01:36565800..36565824 (25 bp)
ACTGTCACTTCGACGTGCACTTGAG
LOC_Os01g62600
OsAffx.21744.2.S1_x_at--316--8711Chr01:36565833..36565857 (25 bp)
TGTCCATGGCGTGGCTGGTCAACGA
LOC_Os01g62600
OsAffx.21744.2.S1_x_at--687--8411Chr01:36565859..36565883 (25 bp)
GGCCCTCTGCCGAGTCAGAAGATGT
LOC_Os01g62600
Target Sequence 
AACTTCTCGAGCAAGTTCCGCAGCCTCGCGACCGCGCGGTACCCGGCGCGCGTGCCGCGGGCCGTCGACCGCCACGTGCT
CTTCACCGTCGGCCTCGGCACGGACCCGTGCCCGTCCAACCAGACGTGCCAGGGCCCGAACGGCACCAAGTTCGCCGCGT
CCATCAACAACAACTCCTTCGTCCGCCCCAGGGTGGCGCTCCTGGAGGCGCACTGCCAGCGCCGGGTGGTGCCGCTCGCG
TTCAACACGTCGGTGGAGCTGGTGCTGCAGGGCACGAGCATCCAGGGCGCCGAGAGCCACCCCTTGCACATGCACGGCTT
CAACTTCTTCGTCGTCGGCCAAGGGTTCGGCAACTACGACCCCGTGAACGACCCGGCCAACTACAACCTCGTCGACCCCG
TCGAGCGCAACACCGTCAGCGTGCCCACCGGCGGATGGGTCGCCGTTCGGTTCCTCGCCGACAATCCCGGGGTGTGGCTC
ATGCACTGTCACTTCGACGTGCACTTGAGCTGGGGCCTGTCCATGGCGTGGCTGGTCAACGACGGCCCTCTGCCGAGTCA
GAAGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21744.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis