Browse Element(s) Details


OsAffx.20192.1.S1_at

Description tigr:9638.m03365
TID=OsAffx.20192.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3759011/11hypothetical protein
LOC_Os06g229704/11hypothetical protein
LOC_Os01g625403/11hypothetical protein
LOC_Os07g366102/11Cellulose synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37520Os.2506.1.S1_at11/1110+19762051..19765321Major Facilitator Superfamily protein, expressed
LOC_Os10g37530Os.46850.1.S1_at11/1110+19765911..19766854Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os10g37540Os.46846.1.S1_at11/1110+19768702..19770368F-box domain containing protein, expressed
LOC_Os10g37560Os.41695.15.S1_s_at11/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.2.S1_x_at10/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.3.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.5.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37570OsAffx.20193.1.S1_at11/1110+19779297..19780514F-box domain containing protein
LOC_Os10g37580OsAffx.30703.1.S1_at11/1110+19781388..19782638hypothetical protein
LOC_Os10g37590OsAffx.20192.1.S1_at11/1110+19783639..19784709hypothetical protein
LOC_Os10g37590OsAffx.15567.2.S1_s_at4/1110+19783639..19784709hypothetical protein
LOC_Os10g37600NANA10+19785292..19786407hypothetical protein
LOC_Os10g37604NANA10+19794855..19795967hypothetical protein
LOC_Os10g37610NANA10+19796726..19799485retrotransposon protein, putative, unclassified
LOC_Os10g37620NANA10+19801829..19804432retrotransposon protein, putative, unclassified
LOC_Os10g37630Os.2517.1.S1_a_at11/1110+19805769..19810079UBX domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005783cellular_componentendoplasmic reticulum
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20192.1.S1_at--375--1611Chr10:19784637..19784661 (25 bp)
AGCGAGGGTGGCCACCTACTTCTAG
LOC_Os10g37590
OsAffx.20192.1.S1_at--41--4411Chr10:19784627..19784651 (25 bp)
GCCACCTACTTCTAGGGAGCGAGGA
LOC_Os10g37590
OsAffx.20192.1.S1_at--553--8093Chr01:36542398..36542536 (25 bp)
GGAGCCCCAATCCTCAGCGCTGGTG
LOC_Os01g62540
OsAffx.20192.1.S1_at--368--1651Chr10:19784444..19784580 (25 bp)
AGCGCTGGTGCCCTACGAATTTGTA
LOC_Os10g37590
OsAffx.20192.1.S1_at--845--3111Chr10:19784427..19784451 (25 bp)
AATTTGTATCGTATTCTCTGCCCTA
LOC_Os10g37590
OsAffx.20192.1.S1_at--845--10215Chr07:21901852..21901990 (25 bp)
TATTCTCTGCCCTAATCACGTCGTT
NONE
OsAffx.20192.1.S1_at--519--3076Chr07:21901979..21902003 (25 bp)
AATCACGTCGTTAGCGTTCCTCGTT
NONE
OsAffx.20192.1.S1_at--1093--6691Chr10:19784388..19784412 (25 bp)
GTTCCTCGTTCCTTGGAGCCGTAAT
LOC_Os10g37590
OsAffx.20192.1.S1_at--106--10832Chr10:19784376..19784400 (25 bp)
TTGGAGCCGTAATCCAGCTATTCGC
LOC_Os10g37590
OsAffx.20192.1.S1_at--1091--7232Chr06:13412460..13412484 (25 bp)
GTCGCCGTCGTAGTCAATGCAGATG
LOC_Os06g22970
OsAffx.20192.1.S1_at--524--4033Chr07:21902109..21902128 (20 bp)
CGTAGTCAATGCAGATGAATCCCCG
NONE
Target Sequence 
AGCGAGGGTGGCCACCTACTTCTAGGGAGCGAGGACACCGGAGATGGGAAAAAAATTCTCTGGGGCGGAGCCCCAATCCT
CAGCGCTGGTGCCCTACGAATTTGTATCGTATTCTCTGCCCTAATCACGTCGTTAGCGTTCCTCGTTCCTTGGAGCCGTA
ATCCAGCTATTCGCCCTCCCGTTCCGGCCATCGCCGCACGTGTAGTTCGCCGCCCTTCCACCGTCGCCGTGGCTATCGCC
GTCGCCGTCGTAGTCAATGCAGATGAATCCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis