Browse Element(s) Details


OsAffx.28855.2.S1_at

Description gb:NM_190567.1
DB_XREF= gi:34908217
GEN=P0406G08.24
TID=OsAffx.28855.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0406G08.24 (P0406G08.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6258411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62520Os.54691.1.S1_x_at2/111+36534712..36537496Zinc knuckle family protein
LOC_Os01g62530OsAffx.11698.1.S1_at11/111+36539139..36540074hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_s_at11/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_at10/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.20192.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.14237.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62550OsAffx.2391.1.S1_at7/111+36543644..36545167hypothetical protein
LOC_Os01g62560OsAffx.21746.1.S1_at11/111+36546114..36547259expressed protein
LOC_Os01g62570NANA1+36549197..36555431GTP-binding protein, putative
LOC_Os01g62584OsAffx.28855.2.S1_at11/111+36557331..36560405expressed protein
LOC_Os01g62584OsAffx.28855.3.S1_x_at3/111+36557331..36560405expressed protein
LOC_Os01g62600OsAffx.21744.2.S1_x_at11/111+36563691..36565915laccase, putative
LOC_Os01g62600Os.46813.2.S1_x_at1/111+36563691..36565915laccase, putative
LOC_Os01g62610OsAffx.11701.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610OsAffx.11701.1.S1_s_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610Os.54469.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62620Os.6108.1.S1_at11/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62620Os.6108.2.S1_x_at9/111+36584284..36588593DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28855.2.S1_at--1095--10571Chr01:36558651..36558675 (25 bp)
TTCTCCGATGGTCCGACCTCCGAGG
LOC_Os01g62584
OsAffx.28855.2.S1_at--1027--6171Chr01:36558767..36558791 (25 bp)
GAGGAGAGAGAAGACCTGGCACTCT
LOC_Os01g62584
OsAffx.28855.2.S1_at--516--6012Chr01:36558772..36558796 (25 bp)
GAGAGAAGACCTGGCACTCTGACAT
LOC_Os01g62584
OsAffx.28855.2.S1_at--1098--7071Chr01:36559095..36559119 (25 bp)
GTCAACGCACCGAGCAACGGATTCA
LOC_Os01g62584
OsAffx.28855.2.S1_at--883--5931Chr01:36559106..36559130 (25 bp)
GAGCAACGGATTCACACCGGACCAC
LOC_Os01g62584
OsAffx.28855.2.S1_at--709--2571Chr01:36559110..36559134 (25 bp)
AACGGATTCACACCGGACCACGCGA
LOC_Os01g62584
OsAffx.28855.2.S1_at--326--1911Chr01:36559156..36559180 (25 bp)
ACGTGCCCAGGAATCCGAGGCGGAA
LOC_Os01g62584
OsAffx.28855.2.S1_at--858--551Chr01:36559168..36559192 (25 bp)
ATCCGAGGCGGAAGGGATCATTCCA
LOC_Os01g62584
OsAffx.28855.2.S1_at--1088--5311Chr01:36559178..36559202 (25 bp)
GAAGGGATCATTCCAACAGCTGGGA
LOC_Os01g62584
OsAffx.28855.2.S1_at--230--7671Chr01:36559181..36559205 (25 bp)
GGGATCATTCCAACAGCTGGGAGAT
LOC_Os01g62584
OsAffx.28855.2.S1_at--132--91Chr01:36559187..36559211 (25 bp)
ATTCCAACAGCTGGGAGATCTCCGG
LOC_Os01g62584
Target Sequence 
TTCTCCGATGGTCCGACCTCCGAGGTCGCACGCGCCGCCGCTGGACCTCCTCCCCAACGCCAGCCGCCCTGCAGAGAGGA
GAGAAATGAGAGAGATCAGGAAGGGAGAGAAGAGGGGAGGAGAGAGAAGACCTGGCACTCTGACATGTGGGGCTCACGGC
CCACCCGACGGCGAGCCGTCCGCGTACGGGGTCAACGCACCGAGCAACGGATTCACACCGGACCACGCGAGCTCCTTCCG
ATGCGGGGCCCACGTGCCCAGGAATCCGAGGCGGAAGGGATCATTCCAACAGCTGGGAGATCTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28855.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis