Browse Element(s) Details


OsAffx.11701.1.S1_at

Description gb:NM_190571.1
DB_XREF= gi:34908225
GEN=P0406G08.28
TID=OsAffx.11701.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0406G08.28 (P0406G08.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6261011/11FK506-binding protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62570NANA1+36549197..36555431GTP-binding protein, putative
LOC_Os01g62584OsAffx.28855.2.S1_at11/111+36557331..36560405expressed protein
LOC_Os01g62584OsAffx.28855.3.S1_x_at3/111+36557331..36560405expressed protein
LOC_Os01g62600OsAffx.21744.2.S1_x_at11/111+36563691..36565915laccase, putative
LOC_Os01g62600Os.46813.2.S1_x_at1/111+36563691..36565915laccase, putative
LOC_Os01g62610OsAffx.11701.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610OsAffx.11701.1.S1_s_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610Os.54469.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62620Os.6108.1.S1_at11/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62620Os.6108.2.S1_x_at9/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62630Os.42450.1.A1_at11/111+36594912..36596586Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g62640OsAffx.11702.1.S1_at11/111+36600875..36601582Zinc finger, C3HC4 type family protein
LOC_Os01g62650Os.27684.1.S2_at11/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62650Os.27684.1.S1_at10/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11701.1.S1_at--484--10651Chr01:36582550..36582574 (25 bp)
TTCCCATTGTTGATGGTATTGCAGC
LOC_Os01g62610
OsAffx.11701.1.S1_at--662--6251Chr01:36582561..36582585 (25 bp)
GATGGTATTGCAGCTATCTACACAT
LOC_Os01g62610
OsAffx.11701.1.S1_at--1061--7851Chr01:36582564..36582588 (25 bp)
GGTATTGCAGCTATCTACACATCTT
LOC_Os01g62610
OsAffx.11701.1.S1_at--773--10731Chr01:36582568..36582592 (25 bp)
TTGCAGCTATCTACACATCTTGGTC
LOC_Os01g62610
OsAffx.11701.1.S1_at--136--1571Chr01:36582572..36582596 (25 bp)
AGCTATCTACACATCTTGGTCTTGC
LOC_Os01g62610
OsAffx.11701.1.S1_at--835--10151Chr01:36582575..36582599 (25 bp)
TATCTACACATCTTGGTCTTGCTTC
LOC_Os01g62610
OsAffx.11701.1.S1_at--814--3731Chr01:36582578..36582602 (25 bp)
CTACACATCTTGGTCTTGCTTCAGT
LOC_Os01g62610
OsAffx.11701.1.S1_at--585--7131Chr01:36582590..36582614 (25 bp)
GTCTTGCTTCAGTACACCTATTCTT
LOC_Os01g62610
OsAffx.11701.1.S1_at--280--4911Chr01:36582595..36582619 (25 bp)
GCTTCAGTACACCTATTCTTCAGAT
LOC_Os01g62610
OsAffx.11701.1.S1_at--360--9651Chr01:36582598..36582622 (25 bp)
TCAGTACACCTATTCTTCAGATTTA
LOC_Os01g62610
OsAffx.11701.1.S1_at--723--7031Chr01:36582601..36582625 (25 bp)
GTACACCTATTCTTCAGATTTACAA
LOC_Os01g62610
Target Sequence 
TTCCCATTGTTGATGGTATTGCAGCTATCTACACATCTTGGTCTTGCTTCAGTACACCTATTCTTCAGATTTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis