Browse Element(s) Details

Os.42450.1.A1_at

Description

gb:NM_190573.1
DB_XREF= gi:34908229
GEN=P0406G08.30
TID=Os.42450.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42450 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0406G08.30 (P0406G08.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0406G08.30 (P0406G08.30), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g62630	11/11	Eukaryotic aspartyl protease family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g62610	OsAffx.11701.1.S1_at	11/11	1	+	36580424..36583805	FK506-binding protein 4, putative, expressed
LOC_Os01g62610	OsAffx.11701.1.S1_s_at	11/11	1	+	36580424..36583805	FK506-binding protein 4, putative, expressed
LOC_Os01g62610	Os.54469.1.S1_at	11/11	1	+	36580424..36583805	FK506-binding protein 4, putative, expressed
LOC_Os01g62620	Os.6108.1.S1_at	11/11	1	+	36584284..36588593	DHHC zinc finger domain containing protein, expressed
LOC_Os01g62620	Os.6108.2.S1_x_at	9/11	1	+	36584284..36588593	DHHC zinc finger domain containing protein, expressed
LOC_Os01g62630	Os.42450.1.A1_at	11/11	1	+	36594912..36596586	Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g62640	OsAffx.11702.1.S1_at	11/11	1	+	36600875..36601582	Zinc finger, C3HC4 type family protein
LOC_Os01g62650	Os.27684.1.S2_at	11/11	1	+	36605802..36613236	Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62650	Os.27684.1.S1_at	10/11	1	+	36605802..36613236	Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62660	Os.10050.1.S1_at	11/11	1	+	36614131..36616492	myb-like DNA-binding domain, SHAQKYF class family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0012501	biological_process	programmed cell death
GO:0005783	cellular_component	endoplasmic reticulum
GO:0004190	molecular_function	aspartic-type endopeptidase activity
GO:0004194	molecular_function	pepsin A activity
GO:0008233	molecular_function	peptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.42450.1.A1_at--1102--837	1	Chr01:36595462..36595486 (25 bp)	GGCGACGCCTACTCCGCATTGAAAG	LOC_Os01g62630
Os.42450.1.A1_at--778--929	1	Chr01:36595450..36595474 (25 bp)	TCCGCATTGAAAGCCGAGTTCTCGA	LOC_Os01g62630
Os.42450.1.A1_at--1056--605	1	Chr01:36595435..36595459 (25 bp)	GAGTTCTCGAGACAGACCAAGCCCT	LOC_Os01g62630
Os.42450.1.A1_at--660--799	1	Chr01:36595373..36595397 (25 bp)	GGAGGCGTTCGACACATGCTTCCGC	LOC_Os01g62630
Os.42450.1.A1_at--727--761	1	Chr01:36595269..36595293 (25 bp)	GGGACAGGCTCCTGTACAAGGTCCC	LOC_Os01g62630
Os.42450.1.A1_at--101--927	1	Chr01:36595260..36595284 (25 bp)	TCCTGTACAAGGTCCCCGGCGAGCG	LOC_Os01g62630
Os.42450.1.A1_at--1125--407	1	Chr01:36595226..36595250 (25 bp)	CGACGGCGTGTGGTGCCTCACGTTC	LOC_Os01g62630
Os.42450.1.A1_at--687--967	1	Chr01:36595209..36595233 (25 bp)	TCACGTTCGGGAACGCGGACATGGT	LOC_Os01g62630
Os.42450.1.A1_at--550--545	1	Chr01:36595199..36595223 (25 bp)	GAACGCGGACATGGTGCCCATCACA	LOC_Os01g62630
Os.42450.1.A1_at--966--81	1	Chr01:36595189..36595213 (25 bp)	ATGGTGCCCATCACAGCGTACGTGA	LOC_Os01g62630
Os.42450.1.A1_at--430--609	1	Chr01:36595132..36595156 (25 bp)	GAGTACGACCTGGAGCGCGGCCGCG	LOC_Os01g62630

Target Sequence

GGCGACGCCTACTCCGCATTGAAAGCCGAGTTCTCGAGACAGACCAAGCCCTGGCTCCCGGCGCTCAACGACCCCAACTT
CGCGTTCCAGGAGGCGTTCGACACATGCTTCCGCGTGCCCCAGGGGCGCGCGCCGCCGGCGAGGCTCCCCGCCGTCACGC
TGCTGTTCAACGGCGCGCAGATGACGGTGGCGGGGGACAGGCTCCTGTACAAGGTCCCCGGCGAGCGCCGTGGCGGCGAC
GGCGTGTGGTGCCTCACGTTCGGGAACGCGGACATGGTGCCCATCACAGCGTACGTGATCGGGCACCACCACCAGATGAA
CGTGTGGGTGGAGTACGACCTGGAGCGCGGCCGCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis