Browse Element(s) Details


Os.10050.1.S1_at

Description gb:AK066659.1
DB_XREF= gi:32976677
TID=Os.10050.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068K17, full insert sequence.
FL= gb:AK066659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6266011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62630Os.42450.1.A1_at11/111+36594912..36596586Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g62640OsAffx.11702.1.S1_at11/111+36600875..36601582Zinc finger, C3HC4 type family protein
LOC_Os01g62650Os.27684.1.S2_at11/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62650Os.27684.1.S1_at10/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62660Os.10050.1.S1_at11/111+36614131..36616492myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g62670Os.9677.2.S1_x_at11/111+36622963..36625449Avr9/Cf-9 rapidly elicited protein 137, putative, expressed
LOC_Os01g62680OsAffx.9549.1.S1_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.1.S1_s_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.2.S1_at10/111+36627105..36628976hypothetical protein
LOC_Os01g62690OsAffx.1034.2.S1_at11/111+36633985..36634734hypothetical protein
LOC_Os01g62700OsAffx.11704.1.S1_at11/111+36638034..36638339hypothetical protein
LOC_Os01g62710OsAffx.29313.1.S1_at1/111+36639787..36643050Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10050.1.S1_at--897--91Chr01:36615908..36615932 (25 bp)
ATTCCCCACATTCATGGAGCTAGCA
LOC_Os01g62660
Os.10050.1.S1_at--29--8771Chr01:36615996..36616020 (25 bp)
TGTTTCCTCGTTTTATTCTAACTGG
LOC_Os01g62660
Os.10050.1.S1_at--552--6431Chr01:36616121..36616145 (25 bp)
GATCATTTCAAGTGCATGCTTTCCA
LOC_Os01g62660
Os.10050.1.S1_at--196--10691Chr01:36616141..36616165 (25 bp)
TTCCATGCATGCTCCCATCAAAAGG
LOC_Os01g62660
Os.10050.1.S1_at--1057--6151Chr01:36616185..36616209 (25 bp)
GAGGCTACGACGCAAAACTCGGCTA
LOC_Os01g62660
Os.10050.1.S1_at--519--3011Chr01:36616223..36616247 (25 bp)
AATGCTGCTCATATCCAAGAACGGC
LOC_Os01g62660
Os.10050.1.S1_at--430--4771Chr01:36616281..36616305 (25 bp)
GCTGCTAATGCTCGAGGTATTGTCT
LOC_Os01g62660
Os.10050.1.S1_at--355--10411Chr01:36616347..36616371 (25 bp)
TTAGGTTTCCTCTGATCTAGATTCA
LOC_Os01g62660
Os.10050.1.S1_at--183--1211Chr01:36616371..36616395 (25 bp)
AGTTTCAAATTCATGCAGCGTGCTG
LOC_Os01g62660
Os.10050.1.S1_at--904--4651Chr01:36616388..36616412 (25 bp)
GCGTGCTGTATCAAATGCTGCCTAG
LOC_Os01g62660
Os.10050.1.S1_at--769--9751Chr01:36616445..36616469 (25 bp)
TAAGATGCTACTCTTTCTAACCTGG
LOC_Os01g62660
Target Sequence 
ATTCCCCACATTCATGGAGCTAGCAAAGGCATATGTCTAACCTTTTACTATGTGTGTTCACTCTTAATAGTTGATACAGT
TTCTGAATTGTTTCCTCGTTTTATTCTAACTGGTTAGCTAGCTCAAGGCTAGAGAAGGAAATGCACCAAGAGTGAATTAT
ATTCAGAAGTTGTGTCTCTTAAGAATTAGGGGACAGAACATACAATATTTTTGGATCATTTCAAGTGCATGCTTTCCATG
CATGCTCCCATCAAAAGGGATAACGAGACTTGTCCACGAGGCTACGACGCAAAACTCGGCTAAAATAAATATGGAAATGC
TGCTCATATCCAAGAACGGCCTCAGGAAAGATGCAAAGTTTTTTTCTGTGTGAGCTGCTAATGCTCGAGGTATTGTCTGA
AGGCTACAGGCACAATAAGGTTTACCAAAGGAATTGTAATTAGGTTTCCTCTGATCTAGATTCAGTTTCAAATTCATGCA
GCGTGCTGTATCAAATGCTGCCTAGATGTAACATCATTTTTCCTCATCATGTATGTGTAAGATGCTACTCTTTCTAACCT
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis