Browse Element(s) Details


Os.9677.2.S1_x_at

Description gb:CB647246
DB_XREF= gi:29642239
DB_XREF=OSJNEb10B14.r
CLONE=OSJNEb10B14
TID=Os.9677.2
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.9677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Avr9Cf-9 rapidly elicited protein (P0446B05.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6267011/11Avr9/Cf-9 rapidly elicited protein 137, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62640OsAffx.11702.1.S1_at11/111+36600875..36601582Zinc finger, C3HC4 type family protein
LOC_Os01g62650Os.27684.1.S2_at11/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62650Os.27684.1.S1_at10/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62660Os.10050.1.S1_at11/111+36614131..36616492myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g62670Os.9677.2.S1_x_at11/111+36622963..36625449Avr9/Cf-9 rapidly elicited protein 137, putative, expressed
LOC_Os01g62680OsAffx.9549.1.S1_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.1.S1_s_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.2.S1_at10/111+36627105..36628976hypothetical protein
LOC_Os01g62690OsAffx.1034.2.S1_at11/111+36633985..36634734hypothetical protein
LOC_Os01g62700OsAffx.11704.1.S1_at11/111+36638034..36638339hypothetical protein
LOC_Os01g62710OsAffx.29313.1.S1_at1/111+36639787..36643050Transposable element protein, putative, MuDR
LOC_Os01g62720NANA1+36644054..36644871GRF zinc finger family protein
LOC_Os01g62730NANA1+36646856..36647065hypothetical protein
LOC_Os01g62740NANA1+36649897..36651381hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9677.2.S1_x_at--944--5251Chr01:36623842..36623866 (25 bp)
GAATCCATCCATTGAACCGTTCAAC
LOC_Os01g62670
Os.9677.2.S1_x_at--56--4031Chr01:36623825..36623849 (25 bp)
CGTTCAACCATTCAACACGCGGGAA
LOC_Os01g62670
Os.9677.2.S1_x_at--580--9691Chr01:36623814..36623838 (25 bp)
TCAACACGCGGGAAACTTTTGCCCA
LOC_Os01g62670
Os.9677.2.S1_x_at--643--1251Chr01:36623788..36623812 (25 bp)
AGATTCTACCTTTGGCTTTTCTCCT
LOC_Os01g62670
Os.9677.2.S1_x_at--813--9571Chr01:36623744..36623768 (25 bp)
TCTTCCTCGCTTCATTTGTCAATGC
LOC_Os01g62670
Os.9677.2.S1_x_at--344--4911Chr01:36623736..36623760 (25 bp)
GCTTCATTTGTCAATGCTTTGATTG
LOC_Os01g62670
Os.9677.2.S1_x_at--821--9831Chr01:36623655..36623679 (25 bp)
TAGAACCGGTGAACTATTCAACGGG
LOC_Os01g62670
Os.9677.2.S1_x_at--140--10431Chr01:36623639..36623663 (25 bp)
TTCAACGGGTTAGAGTAGTAGCAGT
LOC_Os01g62670
Os.9677.2.S1_x_at--619--5651Chr01:36623530..36623554 (25 bp)
GACAGTCAGTGGTCTGAGGCTGACA
LOC_Os01g62670
Os.9677.2.S1_x_at--869--9471Chr01:36623518..36623542 (25 bp)
TCTGAGGCTGACATGCCGGGCCCGC
LOC_Os01g62670
Os.9677.2.S1_x_at--997--5731Chr01:36623455..36623479 (25 bp)
GACGTGTTACAGGAAATTTGTACAA
LOC_Os01g62670
Target Sequence 
GAATCCATCCATTGAACCGTTCAACCATTCAACACGCGGGAAACTTTTGCCCAAAGATTCTACCTTTGGCTTTTCTCCTT
CTTCCTTCTTCCTCTTCCTCTTCCTCGCTTCATTTGTCAATGCTTTGATTGAAAGAGTTGATTTTTTTTGTTTTCTTTTT
GGGAGGGANGGGGTTGGTAGATCNAGGTTAGAACCGGTGAACTATTCAACGGGTTAGAGTAGTAGCAGTAACAGTAATAG
TTTGAAAGGTTGGAGGGAGAAAGNAAAAGTAAAAAACGATGGAGGAGAGTTTGATTGGTTGGTNTGTGTGTGGCGACAGT
CAGTGGTCTGAGGCTGACATGCCGGGCCCGCGTGTCGGCCTNCANACTGGNTGACGGAGTCCGGTGNTGTAAGACGTGTT
ACAGGAAATTTGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9677.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis