Browse Element(s) Details


OsAffx.11704.1.S1_at

Description tigr:9629.m06194
TID=OsAffx.11704.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6270011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62650Os.27684.1.S2_at11/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62650Os.27684.1.S1_at10/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62660Os.10050.1.S1_at11/111+36614131..36616492myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g62670Os.9677.2.S1_x_at11/111+36622963..36625449Avr9/Cf-9 rapidly elicited protein 137, putative, expressed
LOC_Os01g62680OsAffx.9549.1.S1_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.1.S1_s_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.2.S1_at10/111+36627105..36628976hypothetical protein
LOC_Os01g62690OsAffx.1034.2.S1_at11/111+36633985..36634734hypothetical protein
LOC_Os01g62700OsAffx.11704.1.S1_at11/111+36638034..36638339hypothetical protein
LOC_Os01g62710OsAffx.29313.1.S1_at1/111+36639787..36643050Transposable element protein, putative, MuDR
LOC_Os01g62720NANA1+36644054..36644871GRF zinc finger family protein
LOC_Os01g62730NANA1+36646856..36647065hypothetical protein
LOC_Os01g62740NANA1+36649897..36651381hypothetical protein
LOC_Os01g62750OsAffx.29419.2.S1_x_at11/111+36652532..36663378expressed protein
LOC_Os01g62750Os.52319.1.S1_x_at6/111+36652532..36663378expressed protein
LOC_Os01g62750Os.18939.1.S1_s_at2/111+36652532..36663378expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11704.1.S1_at--485--8291Chr01:36638064..36638088 (25 bp)
GGCTTCGTTCTCCAATTGGCTGTTA
LOC_Os01g62700
OsAffx.11704.1.S1_at--752--4911Chr01:36638065..36638089 (25 bp)
GCTTCGTTCTCCAATTGGCTGTTAG
LOC_Os01g62700
OsAffx.11704.1.S1_at--323--10631Chr01:36638067..36638091 (25 bp)
TTCGTTCTCCAATTGGCTGTTAGTG
LOC_Os01g62700
OsAffx.11704.1.S1_at--483--4031Chr01:36638069..36638093 (25 bp)
CGTTCTCCAATTGGCTGTTAGTGGC
LOC_Os01g62700
OsAffx.11704.1.S1_at--481--9451Chr01:36638072..36638096 (25 bp)
TCTCCAATTGGCTGTTAGTGGCGGC
LOC_Os01g62700
OsAffx.11704.1.S1_at--55--9211Chr01:36638074..36638098 (25 bp)
TCCAATTGGCTGTTAGTGGCGGCGC
LOC_Os01g62700
OsAffx.11704.1.S1_at--375--10871Chr01:36638079..36638103 (25 bp)
TTGGCTGTTAGTGGCGGCGCGTACA
LOC_Os01g62700
OsAffx.11704.1.S1_at--843--9851Chr01:36638100..36638124 (25 bp)
TACACGCGGCGACCGCGGGAGGAGT
LOC_Os01g62700
OsAffx.11704.1.S1_at--446--4091Chr01:36638109..36638133 (25 bp)
CGACCGCGGGAGGAGTTGGGCAGCT
LOC_Os01g62700
OsAffx.11704.1.S1_at--724--3931Chr01:36638189..36638213 (25 bp)
CGGCGACGGTTGCTTGGCGGAGGAG
LOC_Os01g62700
OsAffx.11704.1.S1_at--317--6611Chr01:36638262..36638286 (25 bp)
GTTGGGCCGGCTTGGACTGAGGAAA
LOC_Os01g62700
Target Sequence 
GGCTTCGTTCTCCAATTGGCTGTTAGTGGCGGCGCGTACACGCGGCGACCGCGGGAGGAGTTGGGCAGCTGGGAAGGGAG
GACACGGCACGGCGTCGGCGCGACTTGGCGGCGAAGGAAGGGCAGCGGCGACGGTTGCTTGGCGGAGGAGGAGGGCAAGG
CACCGCAGCGGCGGCGCAAGTTGGCGGCTCGGCTGGGTGTTGGGCCGGCTTGGACTGAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis