Browse Element(s) Details


Os.18939.1.S1_s_at

Description gb:AK066114.1
DB_XREF= gi:32976132
TID=Os.18939.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055N07, full insert sequence.
FL= gb:AK066114.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g627502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62680OsAffx.9549.1.S1_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.1.S1_s_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.2.S1_at10/111+36627105..36628976hypothetical protein
LOC_Os01g62690OsAffx.1034.2.S1_at11/111+36633985..36634734hypothetical protein
LOC_Os01g62700OsAffx.11704.1.S1_at11/111+36638034..36638339hypothetical protein
LOC_Os01g62710OsAffx.29313.1.S1_at1/111+36639787..36643050Transposable element protein, putative, MuDR
LOC_Os01g62720NANA1+36644054..36644871GRF zinc finger family protein
LOC_Os01g62730NANA1+36646856..36647065hypothetical protein
LOC_Os01g62740NANA1+36649897..36651381hypothetical protein
LOC_Os01g62750OsAffx.29419.2.S1_x_at11/111+36652532..36663378expressed protein
LOC_Os01g62750Os.52319.1.S1_x_at6/111+36652532..36663378expressed protein
LOC_Os01g62750Os.18939.1.S1_s_at2/111+36652532..36663378expressed protein
LOC_Os01g62760Os.27906.1.S1_a_at11/111+36670797..36672863Protein phosphatase 2C, putative, expressed
LOC_Os01g62770Os.49935.1.S1_at11/111+36672962..36676394expressed protein
LOC_Os01g62770OsAffx.11273.2.S1_at1/111+36672962..36676394expressed protein
LOC_Os01g62780OsAffx.21742.2.S1_at11/111+36681358..36684876expressed protein
LOC_Os01g62780OsAffx.21742.1.S1_at6/111+36681358..36684876expressed protein
LOC_Os01g62790Os.53372.1.S1_x_at11/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_x_at8/111+36686558..36692293expressed protein
LOC_Os01g62790Os.53372.2.S1_at7/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_at2/111+36686558..36692293expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18939.1.S1_s_at--507--2352Chr12:21537240..21537264 (25 bp)
AAAGCATCAGTTGTGCGTGCGCTGT
NONE
Os.18939.1.S1_s_at--19--9152Chr12:21537253..21537277 (25 bp)
TGCGTGCGCTGTTCGTAGACAAACT
NONE
Os.18939.1.S1_s_at--1114--7992Chr12:21537530..21537554 (25 bp)
GGATGTGTTCTTTTGTGCAAGCCAT
NONE
Os.18939.1.S1_s_at--945--3572Chr12:21537567..21537591 (25 bp)
CATTACTTCTACGTCTTACAGGCTT
NONE
Os.18939.1.S1_s_at--269--7152Chr12:21537579..21537603 (25 bp)
GTCTTACAGGCTTGCGAGCCCTAGT
NONE
Os.18939.1.S1_s_at--927--5872Chr12:21537594..21537618 (25 bp)
GAGCCCTAGTGGCTAGCAGAACGAT
NONE
Os.18939.1.S1_s_at--254--3112Chr12:21537634..21537658 (25 bp)
AATAGTATGTGGTGTCTGTACGATA
NONE
Os.18939.1.S1_s_at--1118--7172Chr12:21537647..21537671 (25 bp)
GTCTGTACGATATGCACGTTCTAAT
NONE
Os.18939.1.S1_s_at--738--5092Chr12:21537660..21537684 (25 bp)
GCACGTTCTAATCAAATATCGCCAG
NONE
Os.18939.1.S1_s_at--242--252Chr12:21537675..21537699 (25 bp)
ATATCGCCAGAACTTATACTCTTAT
NONE
Os.18939.1.S1_s_at--197--252Chr12:21537710..21537734 (25 bp)
ATATCTATTCGCTGCACACTGTTTC
NONE
Target Sequence 
AAAGCATCAGTTGTGCGTGCGCTGTTCGTAGACAAACTGCCCCCACAGCCCCCAAAATGACTTGAGGGCTCCATATAATA
TCACCCCACCAAAGCGGTCTTTTGCACCTGGCATGCCAAGGCGTATACTCCTGTCCCTGATCAAGCAAGACTAATGCTCA
CATATTNTGCCCAATGTATTNTTGCAGTGGGAATATAAATAGGGGATGTGTTCTTTTGTGCAAGCCATTAGACCAAATGA
CATTACTTCTACGTCTTACAGGCTTGCGAGCCCTAGTGGCTAGCAGAACGATAAATGAATTCGTATAAATAGTATGTGGT
GTCTGTACGATATGCACGTTCTAATCAAATATCGCCAGAACTTATACTCTTATAATTGGTGCTATATCTATTCGCTGCAC
ACTGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18939.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis