Browse Element(s) Details


Os.49935.1.S1_at

Description gb:AK119400.1
DB_XREF= gi:37989023
TID=Os.49935.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-E01, full insert sequence.
FL= gb:AK119400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6277011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62740NANA1+36649897..36651381hypothetical protein
LOC_Os01g62750OsAffx.29419.2.S1_x_at11/111+36652532..36663378expressed protein
LOC_Os01g62750Os.52319.1.S1_x_at6/111+36652532..36663378expressed protein
LOC_Os01g62750Os.18939.1.S1_s_at2/111+36652532..36663378expressed protein
LOC_Os01g62760Os.27906.1.S1_a_at11/111+36670797..36672863Protein phosphatase 2C, putative, expressed
LOC_Os01g62770Os.49935.1.S1_at11/111+36672962..36676394expressed protein
LOC_Os01g62770OsAffx.11273.2.S1_at1/111+36672962..36676394expressed protein
LOC_Os01g62780OsAffx.21742.2.S1_at11/111+36681358..36684876expressed protein
LOC_Os01g62780OsAffx.21742.1.S1_at6/111+36681358..36684876expressed protein
LOC_Os01g62790Os.53372.1.S1_x_at11/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_x_at8/111+36686558..36692293expressed protein
LOC_Os01g62790Os.53372.2.S1_at7/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_at2/111+36686558..36692293expressed protein
LOC_Os01g62800Os.34775.1.S1_at11/111+36695095..36700788dehydration-responsive family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49935.1.S1_at--890--7251Chr01:36675939..36675963 (25 bp)
GTGCAACGATCCGATCCGGTTAATG
LOC_Os01g62770
Os.49935.1.S1_at--825--1371Chr01:36676104..36676128 (25 bp)
AGAGCGATGTTGCTCCGTCATTTTT
LOC_Os01g62770
Os.49935.1.S1_at--404--5652Chr12:2637466..2637485 (20 bp)
GACAGTATTAACACTGGCGGCTGGT
NONE
Os.49935.1.S1_at--219--8331Chr01:36676157..36676181 (25 bp)
GGCTGGTATAGTGTACCGCCTATGA
LOC_Os01g62770
Os.49935.1.S1_at--966--6391Chr01:36676188..36676212 (25 bp)
GATCGTGTGGTATTCAAGTTTCGCA
LOC_Os01g62770
Os.49935.1.S1_at--953--6831Chr01:36676205..36676229 (25 bp)
GTTTCGCAGGCGGTTAGCTTACGAA
LOC_Os01g62770
Os.49935.1.S1_at--260--2971Chr01:36676243..36676267 (25 bp)
AATGGATCTACGCTGGCGGTCAGCT
LOC_Os01g62770
Os.49935.1.S1_at--663--4851Chr01:36676265..36676289 (25 bp)
GCTACCGCCGGCAAAAATACTGTAT
LOC_Os01g62770
Os.49935.1.S1_at--717--131Chr01:36676288..36676312 (25 bp)
ATTACCATTGGCCTTTAGTCACTGG
LOC_Os01g62770
Os.49935.1.S1_at--1156--10051Chr01:36676303..36676327 (25 bp)
TAGTCACTGGCGGTGCTGTCAGCCA
LOC_Os01g62770
Os.49935.1.S1_at--499--711Chr01:36676358..36676382 (25 bp)
ATGATTTTTCTAGCCGTGACTGTAT
LOC_Os01g62770
Target Sequence 
GTGCAACGATCCGATCCGGTTAATGTGTTTGGAGATGGGAATGGAAATTGGTGTGATTCTGAATGAAAATTTTTTTACCG
TAAATTATTGATGCAAATTGCTGTGGATTTGTGGATCGAGGAGTGGATTTGGGAATAATTTGAACTGGTGTTGACGAAGG
TGGACAGAGCGATGTTGCTCCGTCATTTTTTTTAGCCTTGGACAGTATTAACACTGGCGGCTGGTATAGTGTACCGCCTA
TGAAAAATGGATCGTGTGGTATTCAAGTTTCGCAGGCGGTTAGCTTACGAAAACCGTCAGAGAAAATGGATCTACGCTGG
CGGTCAGCTACCGCCGGCAAAAATACTGTATTACCATTGGCCTTTAGTCACTGGCGGTGCTGTCAGCCACCAGCAAAATT
TCATTTTGGCAAAAAAATAATGATTTTTCTAGCCGTGACTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis