Browse Element(s) Details


Os.34775.1.S1_at

Description gb:AK070193.1
DB_XREF= gi:32980217
TID=Os.34775.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ankyrin-like protein (P0446B05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041I24, full insert sequence.
FL= gb:AK059069.1 gb:AK070193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6280011/11dehydration-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62760Os.27906.1.S1_a_at11/111+36670797..36672863Protein phosphatase 2C, putative, expressed
LOC_Os01g62770Os.49935.1.S1_at11/111+36672962..36676394expressed protein
LOC_Os01g62770OsAffx.11273.2.S1_at1/111+36672962..36676394expressed protein
LOC_Os01g62780OsAffx.21742.2.S1_at11/111+36681358..36684876expressed protein
LOC_Os01g62780OsAffx.21742.1.S1_at6/111+36681358..36684876expressed protein
LOC_Os01g62790Os.53372.1.S1_x_at11/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_x_at8/111+36686558..36692293expressed protein
LOC_Os01g62790Os.53372.2.S1_at7/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_at2/111+36686558..36692293expressed protein
LOC_Os01g62800Os.34775.1.S1_at11/111+36695095..36700788dehydration-responsive family protein, putative, expressed
LOC_Os01g62810Os.28217.1.S1_at11/111+36706484..36712238Regulator of chromosome condensation, putative, expressed
LOC_Os01g62820Os.9242.1.A1_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62820Os.9242.2.S1_x_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62830Os.23635.1.S1_at11/111+36719001..36719713expressed protein
LOC_Os01g62840Os.14234.1.S1_at11/111+36722335..36725034mannose-1-phosphate guanyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34775.1.S1_at--528--6231Chr01:36695420..36695444 (25 bp)
GATGGCGATCCATCATGCGTGACAC
LOC_Os01g62800
Os.34775.1.S1_at--641--3411Chr01:36695393..36695417 (25 bp)
CAGAAGGCCCGTATGCTAGCAGGAA
LOC_Os01g62800
Os.34775.1.S1_at--197--1011Chr01:36695369..36695393 (25 bp)
AGGTTTTGATGTGCGACAAGCCGAT
LOC_Os01g62800
Os.34775.1.S1_at--223--2211Chr01:36695354..36695378 (25 bp)
ACAAGCCGATGGTGCGTTAGCCGAT
LOC_Os01g62800
Os.34775.1.S1_at--722--6771Chr01:36695339..36695363 (25 bp)
GTTAGCCGATCAGGCTGGTCCAGAG
LOC_Os01g62800
Os.34775.1.S1_at--921--5951Chr01:36695317..36695341 (25 bp)
GAGCAATGATGCGAGCCCTGGTTTT
LOC_Os01g62800
Os.34775.1.S1_at--979--8071Chr01:36695285..36695309 (25 bp)
GGAGCCTTTTGAACTGACTACCACA
LOC_Os01g62800
Os.34775.1.S1_at--148--5711Chr01:36695270..36695294 (25 bp)
GACTACCACAGCTACTACGGACTGG
LOC_Os01g62800
Os.34775.1.S1_at--524--10791Chr01:36695185..36695209 (25 bp)
TTGATTCGTCATTCGTTTGTACAAC
LOC_Os01g62800
Os.34775.1.S1_at--195--7031Chr01:36695167..36695191 (25 bp)
GTACAACGACTGATGTAGCCCCTAA
LOC_Os01g62800
Os.34775.1.S1_at--1030--4511Chr01:36695150..36695174 (25 bp)
GCCCCTAACGATTGGCTTGTTTTTG
LOC_Os01g62800
Target Sequence 
GATGGCGATCCATCATGCGTGACACCGCAGAAGGCCCGTATGCTAGCAGGAAGGTTTTGATGTGCGACAAGCCGATGGTG
CGTTAGCCGATCAGGCTGGTCCAGAGCAATGATGCGAGCCCTGGTTTTGTTTTCCGGAGCCTTTTGAACTGACTACCACA
GCTACTACGGACTGGAGATTGACATCTGTTTCAATACATAGGGATAGGTGAATGCCAAAGTTGTAACTAATCAATTTGAT
TCGTCATTCGTTTGTACAACGACTGATGTAGCCCCTAACGATTGGCTTGTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis