Browse Element(s) Details


Os.14234.1.S1_at

Description gb:CB674427
DB_XREF= gi:29678152
DB_XREF=OSJNEe09H13.r
CLONE=OSJNEe09H13
TID=Os.14234.1
CNT=54
FEA=FLmRNA
TIER=Stack
STK=11
UG=Os.14234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GDP-mannose pyrophosphorylase (P0446B05.26), mRNA
FL= gb:AK122126.1 gb:AK061976.1 gb:AK064779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1393011/11mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os01g6284011/11mannose-1-phosphate guanyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13920Os.12288.1.S1_at11/118+8321646..8323055Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13930Os.14234.1.S1_at11/118+8335890..8340226mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os08g13940OsAffx.5808.1.S1_at11/118+8342110..8342613hypothetical protein
LOC_Os08g13950OsAffx.8624.1.S1_s_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13950OsAffx.8624.1.S1_x_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13950OsAffx.30891.1.S1_x_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13960OsAffx.19542.3.S1_x_at2/118+8360777..8366475retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009408biological_processresponse to heat
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0010193biological_processresponse to ozone
GO:0019853biological_processL-ascorbic acid biosynthesis
GO:0030244biological_processcellulose biosynthesis
GO:0004475molecular_functionmannose-1-phosphate guanylyltransferase activity
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14234.1.S1_at--446--7672Chr01:36724091..36724115 (25 bp)
GGGATTACATTACAGGCTTGCGCCT
LOC_Os01g62840
Os.14234.1.S1_at--607--9152Chr01:36724109..36724133 (25 bp)
TGCGCCTTTATCTGGATTCACTTAG
LOC_Os01g62840
Os.14234.1.S1_at--1150--6772Chr01:36724152..36724176 (25 bp)
GTTAGCCACTGGAGCACACATTGTT
LOC_Os01g62840
Os.14234.1.S1_at--611--8192Chr01:36724178..36724202 (25 bp)
GGAATGTGCTAGTTCACGAGAGTGC
LOC_Os01g62840
Os.14234.1.S1_at--681--4592Chr01:36724211..36724235 (25 bp)
GCGAAGGCTGTCTGATTGGTCCTGA
LOC_Os01g62840
Os.14234.1.S1_at--666--812Chr01:36724268..36724292 (25 bp)
ATGGTGTGAGGCTTTCCCGTTGCAC
LOC_Os01g62840
Os.14234.1.S1_at--211--5392Chr01:36724317..36724341 (25 bp)
GAAGCATGCTTGCATATCAAACAGC
LOC_Os01g62840
Os.14234.1.S1_at--481--4952Chr01:36724340..36724364 (25 bp)
GCATTATTGGATGGCACTCAACTGT
LOC_Os01g62840
Os.14234.1.S1_at--842--2012Chr01:36724355..36724379 (25 bp)
ACTCAACTGTTGGACAATGGGCACG
LOC_Os01g62840
Os.14234.1.S1_at--1094--8632Chr01:36724425..36724449 (25 bp)
TGAGGTCTATACCAACGGCGGTGTT
LOC_Os01g62840
Os.14234.1.S1_at--135--7872Chr01:36724529..36724553 (25 bp)
GGTATACTCAAGTTCTTTTAATGCA
LOC_Os01g62840
Target Sequence 
GGGATTACATTACAGGCTTGCGCCTTTATCTGGATTCACTTAGGAAGAGATCANCCAACAGGTTAGCCACTGGAGCACAC
ATTGTTGGGAATGTGCTAGTTCACGAGAGTGCNCAAGATTGGCGAAGGCTGTCTGATTGGTCCTGATGTTGCTATNGGTC
CTGGATGCGTCGTGGAGGATGGTGTGAGGCTTTCCCGTTGCACGGTGATGCGTGGCGTGCNNATTAAGAAGCATGCTTGC
ATATCAAACAGCATTATTGGATGGCACTCAACTGTTGGACAATGGGCACGGATAGAAAATATGACTATCCTNGGAGAGGA
CGTACATGTAGGTGATGAGGTCTATACCAACGGCGGTGTTNTTCTCCCGCACAAAGAGATCAANTCAAGCATCCTGAANG
CCTGAGATTGTCATGTGAANTAANNCTCNTTTTATGTTATGGTATACTCAAGTTCTTTTAATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis