Browse Element(s) Details


OsAffx.5808.1.S1_at

Description tigr:9636.m01382
TID=OsAffx.5808.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1394011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13920Os.12288.1.S1_at11/118+8321646..8323055Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13930Os.14234.1.S1_at11/118+8335890..8340226mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os08g13940OsAffx.5808.1.S1_at11/118+8342110..8342613hypothetical protein
LOC_Os08g13950OsAffx.8624.1.S1_s_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13950OsAffx.8624.1.S1_x_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13950OsAffx.30891.1.S1_x_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13960OsAffx.19542.3.S1_x_at2/118+8360777..8366475retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5808.1.S1_at--245--6611Chr08:8342554..8342578 (25 bp)
GATTGGAATTGATAACGCAGGCAAG
LOC_Os08g13940
OsAffx.5808.1.S1_at--332--6471Chr08:8342544..8342568 (25 bp)
GATAACGCAGGCAAGTACCCTAGGG
LOC_Os08g13940
OsAffx.5808.1.S1_at--145--4531Chr08:8342443..8342467 (25 bp)
GCCCGAGCGGCCACTGGCAAAGTCG
LOC_Os08g13940
OsAffx.5808.1.S1_at--993--9451Chr08:8342316..8342340 (25 bp)
TCGGCGACTAGCTTCGACGATGGTG
LOC_Os08g13940
OsAffx.5808.1.S1_at--1057--2131Chr08:8342288..8342312 (25 bp)
ACAGATCTGGGCCTCTCATGGTCGG
LOC_Os08g13940
OsAffx.5808.1.S1_at--676--8651Chr08:8342281..8342305 (25 bp)
TGGGCCTCTCATGGTCGGATCCGGT
LOC_Os08g13940
OsAffx.5808.1.S1_at--1126--9431Chr08:8342267..8342291 (25 bp)
TCGGATCCGGTGTCCCAGCTGGTGT
LOC_Os08g13940
OsAffx.5808.1.S1_at--21--9331Chr08:8342255..8342279 (25 bp)
TCCCAGCTGGTGTCCACACGGAGGT
LOC_Os08g13940
OsAffx.5808.1.S1_at--795--7211Chr08:8342186..8342210 (25 bp)
GTCGACGACGTGTCGGGAAGGCTGC
LOC_Os08g13940
OsAffx.5808.1.S1_at--1043--5291Chr08:8342170..8342194 (25 bp)
GAAGGCTGCAACGACGGTGACCCTC
LOC_Os08g13940
OsAffx.5808.1.S1_at--191--4091Chr08:8342159..8342183 (25 bp)
CGACGGTGACCCTCGGCCCGATGAT
LOC_Os08g13940
Target Sequence 
GATTGGAATTGATAACGCAGGCAAGTACCCTAGGGGAGAAGCCCTCCTGCCGCTCAGCCTCGGGGTGGCACGGGCGGGAC
CACTTCTCCTCCTCCCCTCCGCCTCGCCGCCGCCCGAGCGGCCACTGGCAAAGTCGGGCGGGCGCATGGACGGCGGCGGC
GGGACTCCTTGCCTCCTCTCGCAGGCACGGCGGCTCGGGGCGCTGCCAAGACGGAGGGAGGACCCCAAGTGGTGGTCATC
GGCGACTAGCTTCGACGATGGTGGGGACAGATCTGGGCCTCTCATGGTCGGATCCGGTGTCCCAGCTGGTGTCCACACGG
AGGTGGTCGGTGTGCGCATGGAGGAGGCCGGCGGCGCGCTGGGCGGAGGTCGACGACGTGTCGGGAAGGCTGCAACGACG
GTGACCCTCGGCCCGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis