Browse Element(s) Details


OsAffx.11273.2.S1_at

Description tigr:9629.m02975
TID=OsAffx.11273.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g319208/11hypothetical protein
LOC_Os01g627701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31870Os.27467.3.S1_x_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.52404.1.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.27467.2.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.27467.1.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.46483.1.S1_at10/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31880NANA1+17794748..17795347retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31890Os.27273.1.A1_at11/111+17797120..17798366transposon protein, putative, unclassified, expressed
LOC_Os01g31900Os.56216.1.S1_at1/111+17800963..17803924transposon protein, putative, Mutator sub-class
LOC_Os01g31900Os.14919.1.S1_at1/111+17800963..17803924transposon protein, putative, Mutator sub-class
LOC_Os01g31910NANA1+17805988..17806677hypothetical protein
LOC_Os01g31920OsAffx.11273.2.S1_at8/111+17809172..17812937hypothetical protein
LOC_Os01g31930OsAffx.11274.1.S1_at10/111+17814783..17815411hypothetical protein
LOC_Os01g31940Os.54587.1.S1_at11/111+17817324..17818664expressed protein
LOC_Os01g31950OsAffx.11275.1.S1_at11/111+17820975..17821482hypothetical protein
LOC_Os01g31960OsAffx.11276.1.S1_at11/111+17823362..17824148hypothetical protein
LOC_Os01g31970OsAffx.11277.1.S1_at10/111+17828069..17829185hypothetical protein
LOC_Os01g31980Os.50605.1.S1_at11/111+17831186..17839170MATE efflux family protein, expressed
LOC_Os01g31980Os.4866.1.S1_at10/111+17831186..17839170MATE efflux family protein, expressed
LOC_Os01g31980Os.46608.1.A1_s_at1/111+17831186..17839170MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11273.2.S1_at--198--6151Chr01:17809359..17809383 (25 bp)
GAGGTGGTGGCCTAGCTCACTGCTT
LOC_Os01g31920
OsAffx.11273.2.S1_at--44--10631Chr01:17809496..17809520 (25 bp)
TTCGTCGAGCAAGTCCGGTTGCGAC
LOC_Os01g31920
OsAffx.11273.2.S1_at--714--10631NONE
TTGCGACTTCCGGATAGAAAGACTG
NONE
OsAffx.11273.2.S1_at--710--5711Chr01:17810577..17810601 (25 bp)
GACTGGAAAGGCATGTGAACCGTTT
LOC_Os01g31920
OsAffx.11273.2.S1_at--509--8691NONE
TGAACCGTTTGAACCGGTCAGACCG
NONE
OsAffx.11273.2.S1_at--307--1691NONE
ACCAGCAGGGTTGTGCGGTCTAACC
NONE
OsAffx.11273.2.S1_at--61--8591Chr01:17812660..17812684 (25 bp)
TGGTTTCGCCTGTTGTTGATGCAAG
LOC_Os01g31920
OsAffx.11273.2.S1_at--174--3991Chr01:17812785..17812809 (25 bp)
CGTGGTACTTTCTTAGCGCTCGATA
LOC_Os01g31920
OsAffx.11273.2.S1_at--734--9991Chr01:17812798..17812822 (25 bp)
TAGCGCTCGATATTCATGATCTAGG
LOC_Os01g31920
OsAffx.11273.2.S1_at--944--76516Chr12:26462471..26462503 (25 bp)
GGGATGGCAATTGTGCCCGTTTACC
NONE
OsAffx.11273.2.S1_at--170--6611Chr01:17812867..17812891 (25 bp)
GATTGGGTATGTTCTTGGGTATTTT
LOC_Os01g31920
Target Sequence 
GAGGTGGTGGCCTAGCTCACTGCTTTGTCGGCGCCCGGCGGCTCGTCGACCTAGACCTCCCCGCTGCCTCCACCGGTGAC
TGCTACTACTACCGCCTCCGGAGGCTGCACCTCACCGGCGTCTCGCTCGGAGGCCGCTTCGTCGAGCAAGTCCGGTTGCG
ACTTCCGGATAGAAAGACTGGAAAGGCATGTGAACCGTTTGAACCGGTCAGACCGCCGGTTGAGGGCCGGTCAGACCGGC
GGCATGTGGCCGGTCTGACCAGCAGGGTTGTGCGGTCTAACCCGGTTCTTGGTCCGACCTCCTTCTGCTGCGCTTCTTCG
CCCGATCTGGTTTCGCCTGTTGTTGATGCAAGGAATATTGATTTGATCAAGCGTGGTACTTTCTTAGCGCTCGATATTCA
TGATCTAGGGATGGCAATTGTGCCCGTTTACCCGTTTGTAGAAACCCCATTAAGATTGGGTATGTTCTTGGGTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11273.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis