Browse Element(s) Details


Os.52404.1.S1_at

Description gb:AK066889.1
DB_XREF= gi:32976907
TID=Os.52404.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089K10, full insert sequence.
FL= gb:AK066889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3187011/11Natural resistance-associated macrophage protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31820OsAffx.11271.1.S1_at11/111+17759708..17760484hypothetical protein
LOC_Os01g31830OsAffx.11272.1.S1_at11/111+17762620..17763060hypothetical protein
LOC_Os01g31840OsAffx.19542.3.S1_x_at10/111+17764328..17768550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31850Os.1948.1.A1_at9/111+17771565..17772101hypothetical protein
LOC_Os01g31860OsAffx.23466.1.S1_at11/111+17779977..17780317hypothetical protein
LOC_Os01g31870Os.27467.3.S1_x_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.52404.1.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.27467.2.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.27467.1.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.46483.1.S1_at10/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31880NANA1+17794748..17795347retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31890Os.27273.1.A1_at11/111+17797120..17798366transposon protein, putative, unclassified, expressed
LOC_Os01g31900Os.56216.1.S1_at1/111+17800963..17803924transposon protein, putative, Mutator sub-class
LOC_Os01g31900Os.14919.1.S1_at1/111+17800963..17803924transposon protein, putative, Mutator sub-class
LOC_Os01g31910NANA1+17805988..17806677hypothetical protein
LOC_Os01g31920OsAffx.11273.2.S1_at8/111+17809172..17812937hypothetical protein
LOC_Os01g31930OsAffx.11274.1.S1_at10/111+17814783..17815411hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006828biological_processmanganese ion transport
GO:0006875biological_processmetal ion homeostasis
GO:0015691biological_processcadmium ion transport
GO:0015692biological_processlead ion transport
GO:0030001biological_processmetal ion transport
GO:0005384molecular_functionmanganese ion transporter activity
GO:0015103molecular_functioninorganic anion transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52404.1.S1_at--1028--10091Chr01:17790863..17790887 (25 bp)
TAGGCATGTTTCTCTTGGGCTTCAA
LOC_Os01g31870
Os.52404.1.S1_at--36--7071Chr01:17790799..17790823 (25 bp)
GTAAGCCAATTCAACTCACTCGCGT
LOC_Os01g31870
Os.52404.1.S1_at--1090--10411Chr01:17790757..17790781 (25 bp)
TTAGTGTCATTCCTTTCACGTTGGT
LOC_Os01g31870
Os.52404.1.S1_at--191--3351Chr01:17790741..17790765 (25 bp)
CACGTTGGTGTAGCTGACTTTGTAT
LOC_Os01g31870
Os.52404.1.S1_at--463--10551Chr01:17790619..17790643 (25 bp)
TTCTTTCCTTTTATACCGTCATTTG
LOC_Os01g31870
Os.52404.1.S1_at--367--6731Chr01:17790584..17790608 (25 bp)
GTTCTTTTCTCTATTTAGTGCCGCA
LOC_Os01g31870
Os.52404.1.S1_at--199--7452Chr08:7654238..7654484 (25 bp)
GTGTCTCGGTCTTGCAAGTGGTAGA
NONE
Os.52404.1.S1_at--637--9731Chr01:17790475..17790499 (25 bp)
TAATCTTTGGTGTTCCGCAGGAGCT
LOC_Os01g31870
Os.52404.1.S1_at--871--10231Chr01:17790451..17790475 (25 bp)
TTTGGCACTTCAAAAGCTCCTCAGT
LOC_Os01g31870
Os.52404.1.S1_at--619--4792Chr02:20746905..20747283 (25 bp)
GCTCCTCAGTGGGATGGCTAACCTA
NONE
Os.52404.1.S1_at--706--9436Chr07:16863662..16863686 (25 bp)
TCGGGTCCTCCTACTTTGTAAATAT
NONE
Target Sequence 
TAGGCATGTTTCTCTTGGGCTTCAATTTAGGAGTAAGCCGTATTCCCCAAAAAAAAAATTTAGGAGTAAGCCAATTCAAC
TCACTCGCGTATTGCCGAGTTGAGATTTTAGTGTCATTCCTTTCACGTTGGTGTAGCTGACTTTGTATTATGACTTATTC
TACAATATGCTATCAACAAATGTTGTGTTCTACAAAATACCATCGACGAACATGAATTTCACAATATAATATCAGACAAT
GGCTTTTCTTTCCTTTTATACCGTCATTTGTCAGTGACATGTTCTTTTCTCTATTTAGTGCCGCAAAAGTACAGTTCACC
CCTACTATAACATGGGTTCAACAAAAATTGCGAGGGTGTCTCGGTCTTGCAAGTGGTAGAAAACAAGAGTAATCTTTGGT
GTTCCGCAGGAGCTTTGGCACTTCAAAAGCTCCTCAGTGGGATGGCTAACCTAGGCAGTTAGCGCTCCTCGGTGTGGTCT
TGGGTGCGTGGGTCTCGGTGGGAGGGCTCGGGTCCTCCTACTTTGTAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis