Browse Element(s) Details


Os.1948.1.A1_at

Description gb:NM_193709.1
DB_XREF= gi:34914501
GEN=P0507H06.18
TID=Os.1948.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0507H06.18 (P0507H06.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0507H06.18 (P0507H06.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g318509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31800Os.12821.1.S1_at5/111+17747377..17748137Histone H2A, putative, expressed
LOC_Os01g31810NANA1+17752195..17752860Histone H2B, putative, expressed
LOC_Os01g31820OsAffx.11271.1.S1_at11/111+17759708..17760484hypothetical protein
LOC_Os01g31830OsAffx.11272.1.S1_at11/111+17762620..17763060hypothetical protein
LOC_Os01g31840OsAffx.19542.3.S1_x_at10/111+17764328..17768550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31850Os.1948.1.A1_at9/111+17771565..17772101hypothetical protein
LOC_Os01g31860OsAffx.23466.1.S1_at11/111+17779977..17780317hypothetical protein
LOC_Os01g31870Os.27467.3.S1_x_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.52404.1.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.27467.2.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.27467.1.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.46483.1.S1_at10/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31880NANA1+17794748..17795347retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1948.1.A1_at--399--4231Chr01:17771523..17771547 (25 bp)
CCGTACGTCCTAATTGTGACGACTA
NONE
Os.1948.1.A1_at--602--1851Chr01:17771541..17771565 (25 bp)
ACGACTAGACGTACATGCATGATCA
NONE
Os.1948.1.A1_at--1012--6431Chr01:17771571..17771595 (25 bp)
GATCAACATTGCCACTGTCGTTGCA
LOC_Os01g31850
Os.1948.1.A1_at--669--4771Chr01:17771693..17771717 (25 bp)
GCTCCATGGGCTGTGTAGGAAGCCA
LOC_Os01g31850
Os.1948.1.A1_at--222--4571Chr01:17771758..17771782 (25 bp)
GCGCCCTATGGATGGTGGTTCTCAT
LOC_Os01g31850
Os.1948.1.A1_at--414--811Chr01:17771769..17771793 (25 bp)
ATGGTGGTTCTCATGGTCGGCCTCC
LOC_Os01g31850
Os.1948.1.A1_at--630--8611Chr01:17771812..17771836 (25 bp)
TGGTGCACGACGTCAGGACGTTCGT
LOC_Os01g31850
Os.1948.1.A1_at--1075--1351Chr01:17771896..17771920 (25 bp)
AGAGAAGGCAGCACGACGCCTCTGG
LOC_Os01g31850
Os.1948.1.A1_at--367--871Chr01:17771976..17772000 (25 bp)
ATGGCGCTCACGGTGACGATGACGT
LOC_Os01g31850
Os.1948.1.A1_at--59--8511Chr01:17772014..17772038 (25 bp)
TGGCATGTCTCTGCCGGCTGTGGCA
LOC_Os01g31850
Os.1948.1.A1_at--103--9891Chr01:17772045..17772069 (25 bp)
TACTTGCTTTCGCTGCTAGTTGTCT
LOC_Os01g31850
Target Sequence 
CCGTACGTCCTAATTGTGACGACTAGACGTACATGCATGATCATGGCCGATCAACATTGCCACTGTCGTTGCACCACCGC
CANNGAAGGGTTGGAAAACATGGAAGACGTCGACTTGGAGGAGCAGTTGGCGCCACCGCCGCCGTCGCCGCTGCCGTCGT
CGGCAGAGCCGCTCCATGGGCTGTGTAGGAAGCCAGNAGCAGGCAGTCACCGGGCGCTCGTCGCCACGCCGGTGCGCGCC
CTATGGATGGTGGTTCTCATGGTCGGCCTCCTCTTCACCGTGCACCTGCTGGTGCACGACGTCAGGACGTTCGTGCTCCT
CGTCGCCGAGTCGNTCTGCATCTTCTTCGTCATGTCCGGCGTGGCGGCGTGCGAGAGAAGGCAGCACGACGCCTCTGGGG
GTGCCTGCCGCGGGTTTAGCACGGTGGCAGAGGTGGCGCTGTGGTCGTTCGCCATGGCGCTCACGGTGACGATGACGTTC
TGGGTGGCGGCTGGCATGTCTCTGCCGGCTGTGGCAGCACTCTACTTGCTTTCGCTGCTAGTTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1948.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis