Browse Element(s) Details


OsAffx.23466.1.S1_at

Description tigr:9629.m02967
TID=OsAffx.23466.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3186011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31820OsAffx.11271.1.S1_at11/111+17759708..17760484hypothetical protein
LOC_Os01g31830OsAffx.11272.1.S1_at11/111+17762620..17763060hypothetical protein
LOC_Os01g31840OsAffx.19542.3.S1_x_at10/111+17764328..17768550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31850Os.1948.1.A1_at9/111+17771565..17772101hypothetical protein
LOC_Os01g31860OsAffx.23466.1.S1_at11/111+17779977..17780317hypothetical protein
LOC_Os01g31870Os.27467.3.S1_x_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.52404.1.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.27467.2.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.27467.1.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.46483.1.S1_at10/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31880NANA1+17794748..17795347retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31890Os.27273.1.A1_at11/111+17797120..17798366transposon protein, putative, unclassified, expressed
LOC_Os01g31900Os.56216.1.S1_at1/111+17800963..17803924transposon protein, putative, Mutator sub-class
LOC_Os01g31900Os.14919.1.S1_at1/111+17800963..17803924transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23466.1.S1_at--1046--2191Chr01:17780011..17780035 (25 bp)
ACAACTTCGGTTGTGTGGCTACGCT
LOC_Os01g31860
OsAffx.23466.1.S1_at--714--8671Chr01:17780022..17780046 (25 bp)
TGTGTGGCTACGCTGATCCGGATCT
LOC_Os01g31860
OsAffx.23466.1.S1_at--691--8851Chr01:17780035..17780059 (25 bp)
TGATCCGGATCTTGTTGCGTGGCAA
LOC_Os01g31860
OsAffx.23466.1.S1_at--104--6431Chr01:17780042..17780066 (25 bp)
GATCTTGTTGCGTGGCAATGTGGAT
LOC_Os01g31860
OsAffx.23466.1.S1_at--448--791Chr01:17780059..17780083 (25 bp)
ATGTGGATGGCATTGGTGTTCCCTC
LOC_Os01g31860
OsAffx.23466.1.S1_at--1069--11Chr01:17780070..17780094 (25 bp)
ATTGGTGTTCCCTCCGATGTATCGA
LOC_Os01g31860
OsAffx.23466.1.S1_at--150--8771Chr01:17780087..17780111 (25 bp)
TGTATCGACCCGGTTGGCCATTATC
LOC_Os01g31860
OsAffx.23466.1.S1_at--1137--7911Chr01:17780098..17780122 (25 bp)
GGTTGGCCATTATCGTCGCAGCCAT
LOC_Os01g31860
OsAffx.23466.1.S1_at--146--131Chr01:17780106..17780130 (25 bp)
ATTATCGTCGCAGCCATGCTTCTAT
LOC_Os01g31860
OsAffx.23466.1.S1_at--10--631Chr01:17780121..17780237 (25 bp)
ATGCTTCTATACTCTCCGGGTGAAA
LOC_Os01g31860
OsAffx.23466.1.S1_at--62--5531Chr01:17780234..17780258 (25 bp)
GAAAACCTTGTTTTGGATGTCCAGA
LOC_Os01g31860
Target Sequence 
ACAACTTCGGTTGTGTGGCTACGCTGATCCGGATCTTGTTGCGTGGCAATGTGGATGGCATTGGTGTTCCCTCCGATGTA
TCGACCCGGTTGGCCATTATCGTCGCAGCCATGCTTCTATACTCTCCGGGTGAAAACCTTGTTTTGGATGTCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis