Browse Element(s) Details


Os.27273.1.A1_at

Description gb:AK068046.1
DB_XREF= gi:32978064
TID=Os.27273.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0507H06.22 (P0507H06.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132J07, full insert sequence.
FL= gb:AK068046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3189011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31860OsAffx.23466.1.S1_at11/111+17779977..17780317hypothetical protein
LOC_Os01g31870Os.27467.3.S1_x_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.52404.1.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.27467.2.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.27467.1.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.46483.1.S1_at10/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31880NANA1+17794748..17795347retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31890Os.27273.1.A1_at11/111+17797120..17798366transposon protein, putative, unclassified, expressed
LOC_Os01g31900Os.56216.1.S1_at1/111+17800963..17803924transposon protein, putative, Mutator sub-class
LOC_Os01g31900Os.14919.1.S1_at1/111+17800963..17803924transposon protein, putative, Mutator sub-class
LOC_Os01g31910NANA1+17805988..17806677hypothetical protein
LOC_Os01g31920OsAffx.11273.2.S1_at8/111+17809172..17812937hypothetical protein
LOC_Os01g31930OsAffx.11274.1.S1_at10/111+17814783..17815411hypothetical protein
LOC_Os01g31940Os.54587.1.S1_at11/111+17817324..17818664expressed protein
LOC_Os01g31950OsAffx.11275.1.S1_at11/111+17820975..17821482hypothetical protein
LOC_Os01g31960OsAffx.11276.1.S1_at11/111+17823362..17824148hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27273.1.A1_at--896--9472Chr08:12265113..12265171 (25 bp)
TCTGTTGGAGGCTGTTTTGCGTTTT
NONE
Os.27273.1.A1_at--246--6812Chr08:12265167..12265190 (24 bp)
GTTTTGCCTTCTCTGTTGGAGACAA
NONE
Os.27273.1.A1_at--230--3071Chr01:17797653..17797677 (25 bp)
AATCTAAGGCGTGTCCACAGGGCGT
LOC_Os01g31890
Os.27273.1.A1_at--33--5391Chr01:17797623..17797647 (25 bp)
GAAGCACCGACCGTGAGCTTGTCGA
LOC_Os01g31890
Os.27273.1.A1_at--240--1031Chr01:17797587..17797611 (25 bp)
AGGTCATGCGCGACATGGCGACACG
LOC_Os01g31890
Os.27273.1.A1_at--887--2292Chr12:24662147..24662171 (25 bp)
AAAGGCTGGGCCTCCGCTAGGTCGA
NONE
Os.27273.1.A1_at--948--6411Chr01:17797493..17797517 (25 bp)
GATCTCGTCGATCTCACTGTGCAGT
LOC_Os01g31890
Os.27273.1.A1_at--44--1951Chr01:17797305..17797329 (25 bp)
ACATGTGGGCCAGCTTAACTTTTTT
LOC_Os01g31890
Os.27273.1.A1_at--488--10351Chr01:17797277..17797301 (25 bp)
TTTATTTGATGACTAGGCGGCCACA
LOC_Os01g31890
Os.27273.1.A1_at--358--8451Chr01:17797259..17797283 (25 bp)
GGCCACATGTACACCACGTCAGCGA
LOC_Os01g31890
Os.27273.1.A1_at--41--2171Chr01:17797220..17797244 (25 bp)
ACAGCCGAGGGAGTCGTTTTAGACG
LOC_Os01g31890
Target Sequence 
TCTGTTGGAGGCTGTTTTGCGTTTTGCCTTCTCTGTTGGAGACAATCTAAGGCGTGTCCACAGGGCGTTGGCGGAAGCAC
CGACCGTGAGCTTGTCGACGGCGAGGTGCAGGTCATGCGCGACATGGCGACACGGAGGGCACTGTCGAGGCGGGCAGCGG
CCAGAAACGCCGTGGGGAAAGGCTGGGCCTCCGCTAGGTCGAGGATCTCGTCGATCTCACTGTGCAGTCAACGCCCTCGT
CGTCGGGCCCAGCAGCCGCAAGCGACGCCCTCGCTGTCGGGCCCTCGACACCGTACACTTGCCGCCGGACGCCGCCGTCG
CCAGTGCCGAGGCGGAAGGGGCCGAGAAGAAGAAAGGAGGGAGAGAGAGAGGTTATTAAAGGGAGGGGATGACATGTGGG
CCAGCTTAACTTTTTTTAATTTATTTGATGACTAGGCGGCCACATGTACACCACGTCAGCGAAAACCACTCTTAAAACAG
CCGAGGGAGTCGTTTTAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27273.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis