Browse Element(s) Details


OsAffx.11272.1.S1_at

Description tigr:9629.m02964
TID=OsAffx.11272.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3183011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31780OsAffx.11269.1.S1_at11/111+17740329..17740665hypothetical protein
LOC_Os01g31780OsAffx.11269.1.S1_x_at11/111+17740329..17740665hypothetical protein
LOC_Os01g31790OsAffx.11270.1.S1_at11/111+17744864..17745530hypothetical protein
LOC_Os01g31790OsAffx.11270.1.S1_x_at11/111+17744864..17745530hypothetical protein
LOC_Os01g31800Os.12821.1.S1_at5/111+17747377..17748137Histone H2A, putative, expressed
LOC_Os01g31810NANA1+17752195..17752860Histone H2B, putative, expressed
LOC_Os01g31820OsAffx.11271.1.S1_at11/111+17759708..17760484hypothetical protein
LOC_Os01g31830OsAffx.11272.1.S1_at11/111+17762620..17763060hypothetical protein
LOC_Os01g31840OsAffx.19542.3.S1_x_at10/111+17764328..17768550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31850Os.1948.1.A1_at9/111+17771565..17772101hypothetical protein
LOC_Os01g31860OsAffx.23466.1.S1_at11/111+17779977..17780317hypothetical protein
LOC_Os01g31870Os.27467.3.S1_x_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.52404.1.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.27467.2.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.27467.1.S1_at11/111+17780869..17791895Natural resistance-associated macrophage protein, expressed
LOC_Os01g31870Os.46483.1.S1_at10/111+17780869..17791895Natural resistance-associated macrophage protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11272.1.S1_at--29--4431Chr01:17762840..17762864 (25 bp)
GCCATCAAGAAGTGACTGGTGGATT
LOC_Os01g31830
OsAffx.11272.1.S1_at--1147--6451Chr01:17762799..17762823 (25 bp)
GATAATCATGTGTTCGTAGGCTTTG
LOC_Os01g31830
OsAffx.11272.1.S1_at--364--6711Chr01:17762788..17762812 (25 bp)
GTTCGTAGGCTTTGACACTACACCA
LOC_Os01g31830
OsAffx.11272.1.S1_at--1105--10731Chr01:17762777..17762801 (25 bp)
TTGACACTACACCAATGGTGGCCCC
LOC_Os01g31830
OsAffx.11272.1.S1_at--56--191Chr01:17762740..17762764 (25 bp)
ATTTATCCACATATTGACATCACTT
LOC_Os01g31830
OsAffx.11272.1.S1_at--844--5671Chr01:17762725..17762749 (25 bp)
GACATCACTTAGTTTTATCCCTTAT
LOC_Os01g31830
OsAffx.11272.1.S1_at--717--6811Chr01:17762714..17762738 (25 bp)
GTTTTATCCCTTATTCACATAGATG
LOC_Os01g31830
OsAffx.11272.1.S1_at--502--8791Chr01:17762677..17762701 (25 bp)
TGTTCAAGATACTTGCTCTTCCTCA
LOC_Os01g31830
OsAffx.11272.1.S1_at--663--1271Chr01:17762671..17762695 (25 bp)
AGATACTTGCTCTTCCTCAATCATT
LOC_Os01g31830
OsAffx.11272.1.S1_at--1140--9231Chr01:17762658..17762682 (25 bp)
TCCTCAATCATTCCCTATACAAATC
LOC_Os01g31830
OsAffx.11272.1.S1_at--268--3591Chr01:17762650..17762674 (25 bp)
CATTCCCTATACAAATCGCATGAGC
LOC_Os01g31830
Target Sequence 
GCCATCAAGAAGTGACTGGTGGATTAGGAAAATACATTACAGATAATCATGTGTTCGTAGGCTTTGACACTACACCAATG
GTGGCCCCCGCCATGAGCCCATTTATCCACATATTGACATCACTTAGTTTTATCCCTTATTCACATAGATGTCGTAACAT
TAATGTTCAAGATACTTGCTCTTCCTCAATCATTCCCTATACAAATCGCATGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis