Browse Element(s) Details


Os.12821.1.S1_at

Description gb:CA753594
DB_XREF= gi:25797633
DB_XREF=00220019043.C06_02051400DM.scf
CLONE=00220019043.C06_02051400DM.scf
TID=Os.12821.1
CNT=77
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.12821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H2A (P0507H06.15), mRNA
FL= gb:AK121750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1710011/11Histone H2A, putative, expressed
LOC_Os01g318005/11Histone H2A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17040OsAffx.3256.2.A1_at11/113+9457823..9458209hypothetical protein
LOC_Os03g17050OsAffx.25115.1.S1_at11/113+9459157..9468019expressed protein
LOC_Os03g17060OsAffx.12889.1.S1_s_at11/113+9468514..9469905RNA-binding protein, putative, expressed
LOC_Os03g17070Os.5694.1.S1_at11/113+9470474..9471545ATP synthase B chain, chloroplast precursor, putative, expressed
LOC_Os03g17084Os.11219.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.47714.1.A1_s_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.12890.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.10929.1.S1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.7519.1.A1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17100Os.12821.1.S1_at11/113+9477951..9478877Histone H2A, putative, expressed
LOC_Os03g17110NANA3+9479970..9481728transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g17120Os.26805.1.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17120Os.26805.2.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17130OsAffx.12891.1.S1_at11/113+9492990..9497209Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g17140Os.51136.1.S1_at10/113+9498935..9500161expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12821.1.S1_at--914--3231Chr03:9478196..9478220 (25 bp)
CAAGAAGGCCTAGGCGTCGGCGCCT
LOC_Os03g17100
Os.12821.1.S1_at--293--4472Chr01:17747976..17748000 (25 bp)
GCCTCGCTTTGCTTGTTTAGCTGGA
LOC_Os01g31800
Os.12821.1.S1_at--40--9352Chr01:17747979..17748003 (25 bp)
TCGCTTTGCTTGTTTAGCTGGAGTA
LOC_Os01g31800
Os.12821.1.S1_at--267--10792Chr01:17747988..17748012 (25 bp)
TTGTTTAGCTGGAGTAGATTGGACG
LOC_Os01g31800
Os.12821.1.S1_at--866--1912Chr01:17748010..17748034 (25 bp)
ACGGGATGTGTGTCTGTTAGTAGTC
LOC_Os01g31800
Os.12821.1.S1_at--1095--7171Chr03:9478130..9478154 (25 bp)
GTCTGTTAGTAGTCTAATGCTGTTG
LOC_Os03g17100
Os.12821.1.S1_at--704--9751Chr03:9478102..9478126 (25 bp)
TAATCTATGGTGGTGTCGTTGAACC
LOC_Os03g17100
Os.12821.1.S1_at--514--7211Chr03:9478088..9478112 (25 bp)
GTCGTTGAACCTTGTGATCTGTGCT
LOC_Os03g17100
Os.12821.1.S1_at--966--2631Chr03:9478081..9478105 (25 bp)
AACCTTGTGATCTGTGCTTGTGTCT
LOC_Os03g17100
Os.12821.1.S1_at--1133--7391Chr03:9478075..9478099 (25 bp)
GTGATCTGTGCTTGTGTCTGTTCAA
LOC_Os03g17100
Os.12821.1.S1_at--176--492Chr01:17747668..17748093 (25 bp)
ATCTGTGCTTGTGTCTGTTCAAGAA
LOC_Os01g31800
Target Sequence 
CAAGAAGGCCTAGGCGTCGGCGCCTCGCTTTGCTTGTTTAGCTGGAGTAGATTGGACGGGATGTGTGTCTGTTAGTAGTC
TAATGCTGTTGATNTAATCTATGGTGGTGTCGTTGAACCTTGTGATCTGTGCTTGTGTCTGTTCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis