Browse Element(s) Details


Os.5694.1.S1_at

Description gb:AK105925.1
DB_XREF= gi:32991134
TID=Os.5694.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23496 H+-transporting ATP synthase chain 9-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A08, full insert sequence.
FL= gb:AK066019.1 gb:AY224460.1 gb:AK105925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1707011/11ATP synthase B chain, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17040OsAffx.3256.2.A1_at11/113+9457823..9458209hypothetical protein
LOC_Os03g17050OsAffx.25115.1.S1_at11/113+9459157..9468019expressed protein
LOC_Os03g17060OsAffx.12889.1.S1_s_at11/113+9468514..9469905RNA-binding protein, putative, expressed
LOC_Os03g17070Os.5694.1.S1_at11/113+9470474..9471545ATP synthase B chain, chloroplast precursor, putative, expressed
LOC_Os03g17084Os.11219.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.47714.1.A1_s_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.12890.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.10929.1.S1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.7519.1.A1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17100Os.12821.1.S1_at11/113+9477951..9478877Histone H2A, putative, expressed
LOC_Os03g17110NANA3+9479970..9481728transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g17120Os.26805.1.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17120Os.26805.2.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17130OsAffx.12891.1.S1_at11/113+9492990..9497209Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5694.1.S1_at--891--8391Chr03:9471136..9471160 (25 bp)
GGCGCTGTTCGACTTCAACCTGACG
LOC_Os03g17070
Os.5694.1.S1_at--168--4091Chr03:9471098..9471122 (25 bp)
CGACCGAGTTCCTGCTGCTGATGGT
LOC_Os03g17070
Os.5694.1.S1_at--494--8151Chr03:9471067..9471091 (25 bp)
GGACAAGCTCTACTTCACGCCGCTG
LOC_Os03g17070
Os.5694.1.S1_at--440--2051Chr03:9471056..9471080 (25 bp)
ACTTCACGCCGCTGGGCAAGTTCAT
LOC_Os03g17070
Os.5694.1.S1_at--505--2831Chr03:9471039..9471063 (25 bp)
AAGTTCATGGACGAGCGCGACGCCA
LOC_Os03g17070
Os.5694.1.S1_at--374--1291Chr03:9470762..9470786 (25 bp)
AGATCGCCTCCCTCAGCGACGAGAT
LOC_Os03g17070
Os.5694.1.S1_at--211--1471Chr03:9470732..9470756 (25 bp)
AGAAGGTGCTCCCATCCGCGTAATG
LOC_Os03g17070
Os.5694.1.S1_at--167--2411Chr03:9470675..9470699 (25 bp)
AACACCAACCATCTCTCGTAAAGAT
LOC_Os03g17070
Os.5694.1.S1_at--206--1251Chr03:9470654..9470678 (25 bp)
AGATTTTCTCCGTGTTTTATCCGTG
LOC_Os03g17070
Os.5694.1.S1_at--180--3811Chr03:9470647..9470671 (25 bp)
CTCCGTGTTTTATCCGTGTGTATAC
LOC_Os03g17070
Os.5694.1.S1_at--861--7071Chr03:9470604..9470628 (25 bp)
GTAATTTCAGTGAACTTCTCGTGAT
LOC_Os03g17070
Target Sequence 
GGCGCTGTTCGACTTCAACCTGACGCTCCCGCTGATCGCGACCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGCTCT
ACTTCACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCC
GAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAA
GATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGG
CGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATC
GTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGT
AAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTNTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis