Browse Element(s) Details


Os.7519.1.A1_x_at

Description gb:AK059957.1
DB_XREF= gi:32969975
TID=Os.7519.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-D05, full insert sequence.
FL= gb:AK059957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g170843/11Core histone H2A/H2B/H3/H4 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17040OsAffx.3256.2.A1_at11/113+9457823..9458209hypothetical protein
LOC_Os03g17050OsAffx.25115.1.S1_at11/113+9459157..9468019expressed protein
LOC_Os03g17060OsAffx.12889.1.S1_s_at11/113+9468514..9469905RNA-binding protein, putative, expressed
LOC_Os03g17070Os.5694.1.S1_at11/113+9470474..9471545ATP synthase B chain, chloroplast precursor, putative, expressed
LOC_Os03g17084Os.11219.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.47714.1.A1_s_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.12890.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.10929.1.S1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.7519.1.A1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17100Os.12821.1.S1_at11/113+9477951..9478877Histone H2A, putative, expressed
LOC_Os03g17110NANA3+9479970..9481728transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g17120Os.26805.1.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17120Os.26805.2.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17130OsAffx.12891.1.S1_at11/113+9492990..9497209Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g17140Os.51136.1.S1_at10/113+9498935..9500161expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7519.1.A1_x_at--1123--2671Chr01:17751223..17751247 (25 bp)
AAGCGTAGCTCGATTGGTGAGAGAC
NONE
Os.7519.1.A1_x_at--907--3111Chr01:17751161..17751185 (25 bp)
AATATTCTTCTCAAGCAGACGCAGA
NONE
Os.7519.1.A1_x_at--709--3692Chr03:9474754..9474777 (24 bp)
CTATCACCATCGTTGCTGAACTGGA
LOC_Os03g17084
Os.7519.1.A1_x_at--980--6791Chr01:17749995..17750019 (25 bp)
GTTTTCCTGCCTTAAAGCGTACTCG
NONE
Os.7519.1.A1_x_at--999--1631Chr01:17749980..17750004 (25 bp)
AGCGTACTCGTACATGACTACATGG
NONE
Os.7519.1.A1_x_at--383--8311Chr01:17749957..17749981 (25 bp)
GGCTAATCTGGCTTAGTTCCAACAA
NONE
Os.7519.1.A1_x_at--919--3272Chr03:9474831..9474855 (25 bp)
CAACAAGACCTATGAGCACTTCTCC
LOC_Os03g17084
Os.7519.1.A1_x_at--751--9291Chr01:17749916..17749940 (25 bp)
TCCCGGCCTGAATGCGTACTTTTGT
NONE
Os.7519.1.A1_x_at--1103--9871Chr01:17749900..17749924 (25 bp)
TACTTTTGTGACTTCTGTTGAGCCA
NONE
Os.7519.1.A1_x_at--990--6651Chr01:17749793..17749817 (25 bp)
GTTGAATTTATGAACCCGAGCTGGA
NONE
Os.7519.1.A1_x_at--348--3012Chr03:9475022..9475046 (25 bp)
AATGCTGGATGACCCATATACCCGC
LOC_Os03g17084
Target Sequence 
AAGCGTAGCTCGATTGGTGAGAGACAACCNAAACTGGAAGGCCAAAGGGATTTGGTTTTGTTAAATATTCTTCTCAAGCA
GACGCAGAGAAAGCTGTTAAGGCAATGGATGGACGGATCATACGTGGAAGACTAATTTTTGTGGAAATTGCAAAAGAATA
AAACTGCATAGGGCATAGTCTATCACCATCGTTGCTGAACTGGAGCAGTTTTCCTGCCTTAAAGCGTACTCGTACATGAC
TACATGGCTAATCTGGCTTAGTTCCAACAAGACCTATGAGCACTTCTCCCGGCCTGAATGCGTACTTTTGTGACTTCTGT
TGAGCCAAGTATTGGTTTGCGAACAACATTGTTTGTTTTTTAAAGACAAAGAAAGCTTTCAAACAGGAAAATTGTTGTTG
GAAGGTTAAGTTGAATTTATGAACCCGAGCTGGAAGGTTATATATGCGTAGAATGCTGGATGACCCATATACCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7519.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis