Browse Element(s) Details


Os.51136.1.S1_at

Description gb:AK061080.1
DB_XREF= gi:32971098
TID=Os.51136.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-F02, full insert sequence.
FL= gb:AK061080.1 gb:AK071043.1 gb:AK103191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1714010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17084Os.11219.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.47714.1.A1_s_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.12890.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.10929.1.S1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.7519.1.A1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17100Os.12821.1.S1_at11/113+9477951..9478877Histone H2A, putative, expressed
LOC_Os03g17110NANA3+9479970..9481728transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g17120Os.26805.1.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17120Os.26805.2.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17130OsAffx.12891.1.S1_at11/113+9492990..9497209Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g17140Os.51136.1.S1_at10/113+9498935..9500161expressed protein
LOC_Os03g17150Os.57344.1.S1_at10/113+9503970..9504901zinc finger DNA-binding protein, putative, expressed
LOC_Os03g17160NANA3+9516046..9518940retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51136.1.S1_at--108--4631Chr03:9499412..9499436 (25 bp)
GCGATTTGATCCTGGGCGACACTGG
LOC_Os03g17140
Os.51136.1.S1_at--1029--331Chr03:9499291..9499315 (25 bp)
ATAAAACTCCTCTTTAGCTCTAGCG
LOC_Os03g17140
Os.51136.1.S1_at--223--1591Chr03:9499276..9499300 (25 bp)
AGCTCTAGCGCGTGTATTGATGGAA
LOC_Os03g17140
Os.51136.1.S1_at--819--5391Chr03:9499254..9499278 (25 bp)
GAAGCGAGGCATCAATCCGAGAAAC
LOC_Os03g17140
Os.51136.1.S1_at--699--3671Chr03:9499202..9499226 (25 bp)
CTTTTCTTCTGTAGTTGCCGCTGAG
LOC_Os03g17140
Os.51136.1.S1_at--1106--8351Chr03:9499177..9499201 (25 bp)
GGCGGTTTCTTTTGTTCTGATCAGA
LOC_Os03g17140
Os.51136.1.S1_at--931--3011Chr03:9499152..9499176 (25 bp)
AATGCTATATACTTTGCTTCTGTTA
LOC_Os03g17140
Os.51136.1.S1_at--583--6471Chr03:9499126..9499150 (25 bp)
GATACACAGTGTACCCAACTGGGTT
LOC_Os03g17140
Os.51136.1.S1_at--149--271Chr03:9499068..9499092 (25 bp)
ATATGCTGTTCCATTATGTGCTTAA
LOC_Os03g17140
Os.51136.1.S1_at--378--7331Chr03:9499051..9499075 (25 bp)
GTGCTTAAATTTTTGCTGCTCATGT
LOC_Os03g17140
Os.51136.1.S1_at--591--10851Chr03:9498935..9498959 (25 bp)
TTGGAGAGAATGGTCTTCCCTGTGC
NONE
Target Sequence 
GCGATTTGATCCTGGGCGACACTGGCAGCGGCGCCAATGGCTCCAAGGAGAATGGCAAGGGTGGGGCACCCAGGGTGGTG
CGCAGGAACGTCGTCAATGCCCCTGCGGCGCCTGCGAGGTAATAAAACTCCTCTTTAGCTCTAGCGCGTGTATTGATGGA
AGCGAGGCATCAATCCGAGAAACAGAAGCAAAATAATGATTTGATCTTTCCTTTTCTTCTGTAGTTGCCGCTGAGGGCGG
TTTCTTTTGTTCTGATCAGAAATGCTATATACTTTGCTTCTGTTATGATACACAGTGTACCCAACTGGGTTTTGAGATGG
GAGTATTTGTTCCATATACTACACATATGCTGTTCCATTATGTGCTTAAATTTTTGCTGCTCATGTGAAAGAACTTATGC
TTGCTGCNCCTGTCGATTGTGAACTTATGAGTTATTATCACTATTGTAAAGAATTTGGTTCATGCTTTCAATACAAATTG
GAGAGAATGGTCTTCCCTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis